BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346572
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47730.1 | Symbols: ATGSTF8, ATGSTF5, GST6, GSTF8 | glutathi... 1009 0.0
> AT2G47730.1 | Symbols: ATGSTF8, ATGSTF5, GST6, GSTF8 | glutathione
S-transferase phi 8 | chr2:19556326-19559463 FORWARD LENGTH=1734
Length=1734
Score = 1009 bits (546), Expect = 0.0
Identities = 617/651 (95%), Gaps = 6/651 (1%)
Strand=Plus/Plus
Query 1 ATGGCCACTATCAAGGTTCACGGAGTTCCCATGTCCACCGCCACCATGCGCGTCCTCGCT 60
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 890 ATGGCCAGTATCAAGGTTCACGGAGTTCCCATGTCCACCGCCACAATGCGCGTCCTCGCT 949
Query 61 GCTCTCTACGAGAAGGATCTCCAGTTCGAGCTTATCCCCGTCGATATGAGAGCCGGTGCC 120
|||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 950 ACTCTTTACGAGAAAGATCTCCAGTTCGAGCTCATCCCCGTCGATATGAGAGCCGGTGCC 1009
Query 121 CACAAGCAAGA-GCCCTACCTTTCCCTCAACCCCTTCGGTCAAATTCCTGCTCTCGAGGA 179
||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1010 CACAAGCAAGAGGCCC-ACCTTGCCCTCAACCCCTTCGGTCAAATTCCTGCTCTCGAGGA 1068
Query 180 CGGTGATCTGTCGCTTTTCGAGTCAAGAGCCATCACACAGTACATAGCTGAGGAATACAG 239
||||||| || |||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1069 CGGTGATTTGACGCTTTTCGAGTCAAGAGCCATCACACAGTACCTAGCAGAGGAATACAG 1128
Query 240 TGAGAAAGGTGAAAAGCTTCTCTGCCC-AGGCTGCAAGAAAG-CGAAGGCAACCACCAAC 297
||||||||||||||||||| ||| ||| || ||||||||||| | ||||||||||| |||
Sbjct 1129 TGAGAAAGGTGAAAAGCTTATCT-CCCAAGACTGCAAGAAAGTC-AAGGCAACCACTAAC 1186
Query 298 GTTTGGCTTCAAGTCGAAGGTCAACAGTTTGACCCTAACGCCTCTAAGCTTGCCTTCGAG 357
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 GTATGGCTTCAAGTTGAAGGTCAACAGTTTGACCCTAACGCCTCTAAGCTTGCCTTCGAG 1246
Query 358 CGTGTCTTTAAAGGCATGTTCGGTATGACCACTGACCCTGCCGCTGTCCAAGAGCTCGAA 417
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1247 CGTGTCTTTAAAGGCATGTTCGGCATGACCACTGACCCTGCCGCTGTCCAAGAGCTCGAA 1306
Query 418 GGTAAGCTCCAGAAAGTCTTGGATATCTACGAGGCTAGGCTCTCCAAATCTGACTTCTTG 477
|||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||
Sbjct 1307 GGTAAGCTCCAGAAAGTCTTGGATGTCTACGAGGCTAGGCTCGCCAAATCTGAGTTCTTG 1366
Query 478 GCTTGTGATTGCTTCACTCTTGCTGATCTTCACCACCTCCCAGCCATCCATTACTTGATG 537
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1367 GCTGGTGATTCCTTCACTCTTGCTGATCTTCACCACCTCCCAGCCATCCATTACTTGTTG 1426
Query 538 GGCACTGACTCCAAGGCCCTCTTTGACTCTCGCCCTAAGGTTAGCGAGTGGGTTAAGAAG 597
|| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1427 GGTACTGACTCCAAGGTGCTCTTTGACTCTCGCCCTAAGGTTAGCGAGTGGATTAAGAAG 1486
Query 598 ATCACTGCCAGGCCTGCTTGGGCTAAGGTTATTGACCTCCAGAAGCAGTAG 648
||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1487 ATCTCTGCCAGGCCTGCTTGGGCTAAGGTTATTGACCTCCAGAAGCAGTAG 1537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31295873581
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5