BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346618
Length=2139
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01190.1 | Symbols: | Octicosapeptide/Phox/Bem1p family pro... 3097 0.0
> AT2G01190.1 | Symbols: | Octicosapeptide/Phox/Bem1p family protein
| chr2:114975-117640 FORWARD LENGTH=2555
Length=2555
Score = 3097 bits (1677), Expect = 0.0
Identities = 2018/2176 (93%), Gaps = 50/2176 (2%)
Strand=Plus/Plus
Query 1 ATGGAACCACCGCCTTCTTCTCTTTCCTCCACCGCGGTGGCTTCCTCCTCTATCCCCGCC 60
||||||||||||||||||||||| ||||||||||||||||||||| |||| ||| |||||
Sbjct 49 ATGGAACCACCGCCTTCTTCTCTGTCCTCCACCGCGGTGGCTTCCACCTCCATCTCCGCC 108
Query 61 GCAACGGCCCCTGTtcctcctcctccacctcctcacgtgacttcttcttaccccgactct 120
|| || || |||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 109 GCCACTGCTCCTGTTCCTCCTCCTCTACCTCCTCACGTGACTTCTTCTTACCCCGAATCT 168
Query 121 ctcgactcctcccctcGTTCTCGCACCACCGATGGCTGGGATGACCTTCCTGCTCCTTC- 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 CTCGACTCCTCCCCTCGTTCTCGCACCACCGATGGCTGGGATGACCTTCCTGCTCCTTCT 228
Query 180 --CGGCGGC---GGC---GGCGGTAGCGCCGTCTCTTCTAAACTCCGTCTTATGTGCAGC 231
||||||| ||| || ||||||||||||||||||||||| ||| ||||||| |||
Sbjct 229 GGCGGCGGCGGTGGCGGTGGTGGTAGCGCCGTCTCTTCTAAACTTCGTTTTATGTGTAGC 288
Query 232 TACGGCGGTCATATCCTTCCTCGCCCTCACGATAAGTCTCTCTGCTACATGGGCGGCGAC 291
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 289 TACGGCGGTCATATCCTTCCTCGCCCTCACGATAAGTCTCTCTGCTACATGGGCGGTGAC 348
Query 292 ACTCGCATCGTTGTCGTCGACCGCAActcctctctcccttctctcctcgctcgtctctcc 351
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 349 ACTCGCATCGTTGTCGTCGACCGTAACTCCTCTCTCCCTTCTCTCATCGCTCGTCTCTCC 408
Query 352 aacacgctcctcgacggtcgctccttcaccctcAAGTACCAGTTACCCAGCGAAGACCTT 411
|||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 409 AACACGCTTCTCGACGGTCGTTCCTTCACCCTCAAGTACCAGTTACCTAGCGAAGACCTT 468
Query 412 GACTCTCTCATCTCCGTCACTACCGACGAAGATCTCGACAACATGATCGAGGAGTATGAC 471
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 469 GACTCTCTCATCTCCGTCACTACCGACGAAGATCTCGACAACATGATCGAAGAGTATGAC 528
Query 472 CGTACCATCTCCGCCTCCAATTCCACCAAACCCTCGCGCCTCCGTTTGTTTCTCTTCACC 531
|||||||| ||||| ||||||||||||||||| ||||| ||||| |||||||| ||||||
Sbjct 529 CGTACCATTTCCGCTTCCAATTCCACCAAACCTTCGCGTCTCCGGTTGTTTCTATTCACC 588
Query 532 TCCAAGCCTGAGGCTACTCAGTCTATGGGTCAGATCCTCGAGAGCTCTGCCAAGAGCGAC 591
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 589 TCCAAGCCTGAGGCTACTCAATCTATGGGTCAGATCCTTGAGAGCTCTGCCAAGAGCGAC 648
Query 592 GATTGGTTCCTCAACGCTCTCAACAGCGCTGGTCTCCTCAATCGAGGATTCTCTGATTCT 651
||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct 649 GATTGGTTCCTCAACGCACTCAATAGCGCCGGTCTTCTCAATCGAGGATTCTCAGATTCT 708
Query 652 GATGCCAACGTCAATCGTTTACTTGGTTTGGACGATGCTCTTGCTCTCCGCTCTAATTCC 711
||| | |||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 709 GATACTAACGTCAATCGTTTACTTGGTTTGGATGATGCTCTTGCTCTCCGTTCTAATTCC 768
Query 712 GGTGACAACAACACCAATCGAGATGGAGATGACGGCTCCGTTAAAAGCGCCAAGCACCAA 771
||||||||| | | |||||||||||| ||||| ||||| ||||||||||||||||| ||
Sbjct 769 GGTGACAAC-A-A-CAATCGAGATGGTGATGATGGCTCTGTTAAAAGCGCCAAGCAACAG 825
Query 772 C-AGATCCAGCAGCCTC--C-GC-CG--C--C-GCAAGGAGGCCAAGATGTGAACTGCTT 821
| | |||| | ||| | | || | | | |||||||||||||||||||||||||||
Sbjct 826 CAACCTCCA-CCGCCGCAGCAGCAAGAACAACAGCAAGGAGGCCAAGATGTGAACTGCTT 884
Query 822 ACCGGATTCTCCCATGTTGGATACATCCTCTTCTTTCGGCTCTACTTCTTCCTCTCCCTC 881
|||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 885 ACCGGATTCTCCGATGTTAGATACATCCTCTTCTTTCGGCTCCACTTCTTCGTCTCCCTC 944
Query 882 TCTCGCCAATTTGCCGCCCATTCGTGTCCATGTAGAGGAACCCGGCGGGGTTAGGACTTT 941
|||||||||||||| || || |||||||||||||||||||| ||||| || ||||||||
Sbjct 945 GCTCGCCAATTTGCCTCCGATCCGTGTCCATGTAGAGGAACCAGGCGGAGTAAGGACTTT 1004
Query 942 GCCAGATCAGAGAAATCTGGGAATCGAAGAACAATTCGCACGATTCAACGTTGGGAACAA 1001
|||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 1005 GCCAGATCAGAGAAATCTGGGAATTGAAGAACAGTTCGCACGATTCAACGTCGGGAACAA 1064
Query 1002 GCATCAGCTACAGGACGACGGATTTGCTGCGATCTCTTCACCACCGCCGATGCCTGTCAC 1061
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 GCATCAGCTACATGACGACGGATTTGCTGCGATCTCTTCACCACCGCCGATGCCTGTCAC 1124
Query 1062 AATCGCCCTTCCTGCTGCGCCTGTGAGTGCTGCGACCGTCTCAAATGAGTTCCAGGCGAG 1121
|||||||||||||||||||||||||| ||| || |||||||| |||||||||||||| ||
Sbjct 1125 AATCGCCCTTCCTGCTGCGCCTGTGACTGCAGCCACCGTCTCTAATGAGTTCCAGGCCAG 1184
Query 1122 GGTTTTCTCGGACGACGAGAGATCCGATCACGGCGTGCAGGCTGGATACAGAAAACCTCC 1181
||||| ||| || |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1185 GGTTTACTCAGATGACGAGAGATCCGATCACGGCGTGCAGGCTGGATACAGGAAGCCTCC 1244
Query 1182 GACTCCACGATCGCAGCCGCAGAATCTACCGCCTCAGCAGGCTCATCAGCTCAAGTCAAA 1241
|||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1245 GACTCCGCGATCGCAGCCGCAGAATCTACCGCCTCAGCAGGCTCATCAGCTGAAATCAAA 1304
Query 1242 TAGCGGTGG---ACACGAGCTGCCATCACCAAATTCCGTTTCCAGTGATAGCAGTATGAG 1298
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1305 TAGCGGTGGTGGACACGAGCTGCCATCACCCAATTCCGTTTCCAGTGATAGCAGTATGAG 1364
Query 1299 CAACCCAATGTTTCACCAAAGACCTTCTGTCTATCAAGAACCAATCCCTCAGATGCCCTC 1358
|||||||||||||||||||||||| |||||||||||||||||||| ||||||| || ||
Sbjct 1365 CAACCCAATGTTTCACCAAAGACCATCTGTCTATCAAGAACCAATTGCTCAGATACCTTC 1424
Query 1359 TGGCTCTACCGTAGTTACTGGTATGATCAATCCCTCAGATCCAAGCACACTTTTGTCCCA 1418
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1425 TGGCTCTACCGTTGTTACTGGTATGATCAATCCCTCAGATCCAAGCACACTTTTGTCACA 1484
Query 1419 ACATCAGAATCAGGACCCAGCATACATCCTTCACCCCCAATTTGAGCAACAATCTGCACA 1478
|||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 1485 GCATCAGAATCAGGACCCAGCCTATATCCTTCACCCCCAGTTTGAGCAACAATCTGCACA 1544
Query 1479 ATCTCAGCCACAACAGCAGCAACAGTTCATACATACTGCTCCTCCTCCTCCTCAATACAT 1538
|||||||||||| |||||| ||||||||| |||||| ||||||||| |||||||
Sbjct 1545 ATCTCAGCCACA---GCAGCA---GTTCATACACACTGCTGCTCCTCCTC---AATACAT 1595
Query 1539 TCATCACCATCCGTCTAGCGGCCTTCCTGTTCAGACTTACATCCAGGTTTACCCTTCGCA 1598
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1596 TCATCACCATCCGTCTAGCGGCCTTCCTGTCCCGACTTACATCCAGGTTTACCCTTCGCA 1655
Query 1599 ACAGCCGCA---GTCCTTCCACCAACACCCAGGTCGAGTGGATCAGCAGCCTTATCCTGT 1655
|||||| || ||||||||| |||||| |||||||| ||||||||||||||||||||||
Sbjct 1656 ACAGCCTCAACAGTCCTTCCATCAACACGCAGGTCGACTGGATCAGCAGCCTTATCCTGT 1715
Query 1656 TTATTATGTCACTGCTCCCGTCCCACCTAGGCCCTACAGTATGCCTGTGCCACAATCTCC 1715
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1716 TTATTATGTCACTGCTCCTGTCCCACCTAGGCCCTACAGTATGCCTGTGCCACAATCTCC 1775
Query 1716 AAGTGTGAGCGAGGCTCCAGGATCTCTCCC-T-T--C--T---AGC---ACCATGATGCC 1763
|||||||||||| ||| |||| ||| |||| | | | | | | |||||||||||
Sbjct 1776 AAGTGTGAGCGATGCTGCAGGGTCTATCCCCTCTAACCATCCCAACTCTACCATGATGCC 1835
Query 1764 TCCACCTCCTAACAACCACATGAGAAGTGTTAGCGGTGGCAAACCTGAGATGGGACAGGC 1823
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1836 TCCACCTCCTAACAACCACATGAGAAGTGTTAGCAGTGGCAAACCTGAGATGGGACAGGC 1895
Query 1824 TGGGGTTTACACAACAGCCCCAGGTGTGGGCGGTACTCAGATGGTTCACCAGATTCCAAC 1883
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1896 TGGGGTTTACACAACAGCCCCAGGTGTGGGCGGTGCTCAGATGGTTCACCAGATTCCCAC 1955
Query 1884 AAACCAGCAGCAATTCATGGGGTATTCGCAGATCCGTCACCCTCCTCAGTCTGGTTCAGC 1943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1956 AAACCAGCAGCAATTCATGGGGTATTCGCAGATCCGTCACCCTCCTCAGTCTGGTTCAGC 2015
Query 1944 TGGGAATCCAAACTATGGATATGAATACGCCGACAATGCTCATACACAGATATACTACAC 2003
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 2016 TGGGAATCCAAACTATGGATATGAATATGTCGACAATGCTCATACACAGATATACTACAC 2075
Query 2004 TCAACCTCTGGGACATGCACAGTACCAGACAATGACTGGGCCTCCACCTGCCATGGTGAT 2063
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2076 TCAACCTATGGGACATGCACAGTACCAGACAATGACTGGGCCTCCACCTGCCATGGTGAT 2135
Query 2064 GCCTGATGGCTCTGCTGCTGCTAAGCTTCCAGCTGAGAACATGACTCAACAGATCCGGAG 2123
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2136 GCCTGATGGTTCTGCTGCTGCTAAGCTTCCAGCTGAGAACATGACTCAACAGATCCGGAG 2195
Query 2124 TTCACAGCCATTGTGA 2139
||||||||||||||||
Sbjct 2196 TTCACAGCCATTGTGA 2211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106073751585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5