BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346626
Length=1599
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01280.1 | Symbols: MEE65 | Cyclin/Brf1-like TBP-binding pro... 894 0.0
AT2G45100.1 | Symbols: | Cyclin/Brf1-like TBP-binding protein ... 797 0.0
AT1G30455.1 | Symbols: | transcription regulators;translation ... 172 7e-42
AT1G42650.1 | Symbols: | transposable element gene | chr1:1602... 156 7e-37
> AT2G01280.1 | Symbols: MEE65 | Cyclin/Brf1-like TBP-binding protein
| chr2:145676-149394 FORWARD LENGTH=2257
Length=2257
Score = 894 bits (484), Expect = 0.0
Identities = 605/661 (92%), Gaps = 18/661 (3%)
Strand=Plus/Plus
Query 424 AGCTACCTTCGAGTTAGCGTTTACGAGTTAGGTTCTGTGTACTTGCAACTCTGTGAAATG 483
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 370 AGCTACCTTCGAGTTAGCGTTTACGAGTTAGGTTCCGTGTACTTGCAACTCTGTGAAATG 429
Query 484 TTCTACCTTGTGCAAAACGGGAACTATGAGGAGCTTGTTGATCCTTCAATCTTCATTCCT 543
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 430 CTGTACCTTGTGCAAAACAAGAACTATGAGGAGCTTGTTGATCCTTCAATCTTCATTCCT 489
Query 544 CAATTCATGAACAACTTATTGAAAGGTGCACACAATATAGCAAAAAATGTCTTGGATAAG 603
| ||||| |||| ||||||||||||||||||| || ||||||| ||||| | | ||
Sbjct 490 CGATTCACAAACAGCTTATTGAAAGGTGCACACGCTAAAGCAAAAGATGTC--GCA-AA- 545
Query 604 GTCTTGGGTACGGCTACAAACATTATATCTAGTATGAAGAGAGATTGGATGCAGACCGGC 663
| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 546 --C------ACGGCTAAAAACATTATATCTAGTATGAAGAGAGATTGGATACAGACAGGC 597
Query 664 CGGAAACCAAGTGGAATATGTGGAGCAGCAATTTACATAGCTGCACTTTCTCATGGTATC 723
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 598 CGGAAACCAAGTGGAATATGTGGAGCAGCAATTTACATGGCTGCACTTTCTCATGGTATC 657
Query 724 ATGTGCTCTAGGGCAGATATTGCAAAAATTGTGCATATGTGTGAAGCAACAATAACCAAA 783
|||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 658 ATGTACTCTAGGGCAGACATTGCAAAAGTTGTGCATATGTGTGAAGCAACAATAACCAAA 717
Query 784 AGATTGGATGAGTTTGCTAATACCGAGGCTGCAAGTTTAACTGTTGATGAGCTTGATAAA 843
|||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 718 AGATTGAATGAATTTGCTAATACCGAGGCTGGAAGTTTAACTGTTGATGAGCTTGATGAA 777
Query 844 AGCGAAAATATATTGCGTGAA-AAACCTTTTAGCCCAAGACCAAATTCTGACGAAGGAGT 902
|||||| | ||||||||| || |||| ||||| ||||||||||||||||||| |||||||
Sbjct 778 AGCGAAGAGATATTGCGTAAAGAAAC-TTTTACCCCAAGACCAAATTCTGACAAAGGAGT 836
Query 903 AGTGAACTGTAAGCATAAGGATTTAAAACGTTTTGGTT-TCGGATTATGTAAGAGCTGTC 961
|||||||||||| ||||||||||||||||| ||||||| | |||||||||||||||||||
Sbjct 837 AGTGAACTGTAAACATAAGGATTTAAAACGCTTTGGTTAT-GGATTATGTAAGAGCTGTC 895
Query 962 ACGATGCTTTCATGAAAATTTCTGGTGGAGTTGTTGGTGGGTCGGATCCTCCTGCTT-TC 1020
|||| | |||||| | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 896 ACGACGATTTCATTATAATTTCTGGTGGAGTTGTTGGTGGGTCGGATCCTCCTGCTTATC 955
Query 1021 CAGCGACCAGAGAAAGAGAGAATGGAAAAAGCAGCTAGAGAAGTAAACGAGGGAGGAATT 1080
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 956 -AGCGAGCAGAGAAAGAGAGAATGGAAAAAGCAGCTAGAGAAGAAAACGAGGGAGGAATT 1014
Query 1081 G 1081
|
Sbjct 1015 G 1015
Score = 411 bits (222), Expect = 1e-113
Identities = 338/390 (87%), Gaps = 23/390 (6%)
Strand=Plus/Plus
Query 1 ATGGTGTGGTGTAACCATTGTGCGAAGAATGTTCCCGGAATTCGCCCCTTCGACGGTGGT 60
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATGGTGTGGTGTAAGCATTGTGCGAAGAATGTTCCCAAAATTCGCCCCTTCGACGGTGGT 60
Query 61 TTGGCATGTGATTTATGTGGGAGGATATTGGAAAACTTCAATTTTTCTGA-TGAAGTTAC 119
|||||||||||||||||||||||||| ||||||||||||||||||||| | ||| |||||
Sbjct 61 TTGGCATGTGATTTATGTGGGAGGATTTTGGAAAACTTCAATTTTTCT-ACTGATGTTAC 119
Query 120 ATTCGTTAAGAATGCGGCTGGACAGAGCCAAGCGTCAGGTAACATAGTGACGAGTGTTCA 179
|||||||||||||| ||| | || | || || | |||| |||||||||||||||
Sbjct 120 CTTCGTTAAGAATGCCGCT-G---GA--C-AG-GT-ATGTAATATAGTGACGAGTGTT-- 168
Query 180 GAGTGGGATTCCAAGCTCACGTG-TACGAAGATTTAGAATAGCTAGAGATGAGTTTAGGA 238
| || ||| |||||||||||| || | ||| |||| ||||| ||||||||| ||||
Sbjct 169 --G-GGAATT-CAAGCTCACGTGATA-GGAGAAGGAGAAAAGCTATAGATGAGTTAAGGA 223
Query 239 ATTTGAAAGATGCCTTGGGAATTGGTGATGAAAGAGATGATGTGATTGACACGGCTGCCC 298
|||||||||||||||| ||||| |||||||| |||||||||||| |||||| ||||| ||
Sbjct 224 ATTTGAAAGATGCCTTAGGAATCGGTGATGAGAGAGATGATGTGGTTGACATGGCTG-CC 282
Query 299 G-ATTCTTTGAAATGGCAACT-GAACAAAACTTCACCAAAGGGCGCAGAACTGAACTTGT 356
| ||||| |||| ||||| | || |||||||||||||||||||||||| ||||||||||
Sbjct 283 GTATTCTATGAAGCGGCAA-TGGACCAAAACTTCACCAAAGGGCGCAGAGCTGAACTTGT 341
Query 357 ACAGTCTTCCTGTCTCTACTTGACTTGCAG 386
|||||||||||||||||| ||| |||||||
Sbjct 342 ACAGTCTTCCTGTCTCTATTTGGCTTGCAG 371
Score = 246 bits (133), Expect = 4e-64
Identities = 288/355 (81%), Gaps = 42/355 (12%)
Strand=Plus/Plus
Query 1257 AGCTGTGGCGAAATCTAGAAAGGAAAAGCGACAAAAACGTGCTGAGGAAGCAAAGAACGC 1316
|||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||| ||
Sbjct 1323 AGCTGTGGCGAATTCTAGAAAGGAAAAGCGACGAAAACGTGCTGAGGAAGCTAAGAATGC 1382
Query 1317 GCCTCCACCAGCTACAGCCATGGAAGCAGTTCGCAGAATAGTTAAGAGAAAGAGACTCAG 1376
|||||| |||||||||||| ||||||| | | || | | ||||||||||
Sbjct 1383 ACCTCCATCAGCTACAGCCACGGAAGCA--T--C-------TT---ATACAGAGACTCAG 1428
Query 1377 -TGG--AATCAACTGCGATTTTTTGGACGAGCTCTTAGATAATGTGCCAGCGgagaagtc 1433
|| ||||||| | || |||||||||||||||| |||| | ||| | || |
Sbjct 1429 CGGGTTAATCAAC-ACCATGTTTTGGACGAGCTCTTGGATACT-AGCC--C----AA--C 1478
Query 1434 acagaagaaaccgagaaccgagacagttacagagaagaagaaggaagagcatgagaTTGT 1493
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1479 ACAGAAGAAACCGAGAACCGAGACAGTAACGGAGAAGAAGAAGGAAGAGCATGAGATTGT 1538
Query 1494 TGAAGATGAAG-A-A-GCAG--CA-TACG-AG-ATGA-ACACAGATGAGAAATTCTATGA 1544
||||||||||| | | | || | |||| || | | || |||||||||| ||||||||
Sbjct 1539 TGAAGATGAAGAAGATGAAGAAGACTACGCAGCACCACACGCAGATGAGAACTTCTATGA 1598
Query 1545 AGACGAAGTGGAAGAGGAAGAGGAAGAGGATGGTTATGATTTTGGATTGTACTAA 1599
|||||||||||||||||||||| || ||||||||||||||||||||| |||
Sbjct 1599 AGACGAAGTGGAAGAGGAAGAG-AA-----TGGTTATGATTTTGGATTGTATTAA 1647
> AT2G45100.1 | Symbols: | Cyclin/Brf1-like TBP-binding protein
| chr2:18595348-18598438 REVERSE LENGTH=1820
Length=1820
Score = 797 bits (431), Expect = 0.0
Identities = 887/1099 (81%), Gaps = 64/1099 (6%)
Strand=Plus/Plus
Query 1 ATGGTGTGGTGTAACCATTGTGCGAAGAATGTTCCCGGAATTCGCCCCT-TCGACGGTGG 59
|||||||||||||| ||||||| |||||| ||||||||||| ||||||| | || | ||
Sbjct 147 ATGGTGTGGTGTAAACATTGTGGGAAGAACGTTCCCGGAATACGCCCCTAT-GATGCTGC 205
Query 60 TTTGGCATGTGATTTATGTGGGAGGATATTGGAAAACTTCAATTTTTCTGA-TGAAGTTA 118
||| |||||||||||||||| ||||| ||||| || |||||||||||| | ||||||||
Sbjct 206 ATTGTCATGTGATTTATGTGGCAGGATTTTGGAGAATTTCAATTTTTCT-ACTGAAGTTA 264
Query 119 CATTCGTTAAGAATGCGGCTGGACAGAGCCAAGCGTCAGGTAACATAGTGACGAGTGTTC 178
|||||||||||||||| ||||||||||||||||| || ||||||||| | | ||||||||
Sbjct 265 CATTCGTTAAGAATGCTGCTGGACAGAGCCAAGCTTCTGGTAACATACTCAAGAGTGTTC 324
Query 179 AGAGTGGGAT-TCCAAGCTCACGTGTACGAAGATTTAGAATAGCTAGAGATGAGTTTAGG 237
||||||| || | |||||||||||| | | | | | |||| ||||| |||||| ||| |
Sbjct 325 AGAGTGGCATGT-CAAGCTCACGTGAAAGGATAATCAGAAAAGCTACTGATGAGCTTATG 383
Query 238 AATTTGAAAGATGCCTTGGGAATTGGTGATGAAAGAGATGATGTGATTGACACGGCTGCC 297
||||||| |||||| ||||||||||||||||| ||||||||||| |||| || |||| |
Sbjct 384 AATTTGAGAGATGCTTTGGGAATTGGTGATGACAGAGATGATGTTATTGTCATGGCT-TC 442
Query 298 CGA-TTCTTTGA-AATGGCAAC-TGAACAAAACTTCACCAAAGGGCGCAG-AACTGAACT 353
| |||||| | ||| || || ||| || || ||||| ||||| || || || |||||
Sbjct 443 TAATTTCTTT-AGAATTGC-ACTTGATCATAATTTCACTAAAGGCCGTAGCAA-AGAACT 499
Query 354 TGTACAGTCTTCCTGTCTCTACTTGACTTGCAGAGAAAAGAAAATT-CCGTTTCTACTTA 412
||| ||||| |||||||||||||||||||| | || ||||| || |||| ||||
Sbjct 500 AGTATTCTCTTCATGTCTCTACTTGACTTGCAG-GCAATTCAAATTGGCGGTTCTTCTTA 558
Query 413 TTGATTTTTCAAGCTACCTTCGAGTTAGCGTTTACGAGTTAGGTTCTGTGTACTTGCAAC 472
|||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 559 TTGATTTTTCAAGCTACCTTCGTGTTAGCGTTTACGATTTAGGTTCTGTGTATTTGCAAC 618
Query 473 TCTGTGAAATGTTCTACCTT-GTGCAAAACGGGAACTATGAGGAGCTTGTTGATCCTTCA 531
||||||| ||| ||||| || | ||||| ||||||||| | |||||||||||||||
Sbjct 619 TCTGTGACATGCTCTACATTACAG-AAAACCACAACTATGAGAAACTTGTTGATCCTTCA 677
Query 532 ATCTTCATTCCTCAATTCAT-GAACAACTTATTGAAAGGTGCACACAATATAGCAAAAAA 590
|| |||||||||| |||| | |||| |||||||||||||||||| | || || |||
Sbjct 678 ATTTTCATTCCTCGATTC-TCAAACATGTTATTGAAAGGTGCACAC-A-AT---AATAAA 731
Query 591 TGTCTTGGATAAGGTCTTGGGTACGGCTACAAACATTATATCTAGTATGAAGAGAGATTG 650
| | | | | | | ||||||||| |||||||| |||||||||||||||||||
Sbjct 732 ---C-TCG-T---G-C-T---AACGGCTACACACATTATAGCTAGTATGAAGAGAGATTG 778
Query 651 GATGCAGACCGGCCGGAAACCAAGTGGAATATGTGGAGCAGCAATTTACATAGCTGCACT 710
|||||||||||| |||||||||||||||||||||||||||||| | || | |||||||||
Sbjct 779 GATGCAGACCGGACGGAAACCAAGTGGAATATGTGGAGCAGCACTCTATACAGCTGCACT 838
Query 711 TTCTCATGGTATCATGTGCTCTAGGGCAGATATTGCAAAAATTGTGCATATGTGTGAAGC 770
|||||||||||||| |||||| | | ||||||| | || ||||||||||| || |||||
Sbjct 839 TTCTCATGGTATCAAGTGCTCCAAGACAGATATCGTGAACATTGTGCATATATGCGAAGC 898
Query 771 AACAATAACCAAAAGATTGGAT-GAGTTTGCTA-ATACCGAGGCTGCAAGTTTAACTGTT 828
||| |||| ||||||||| || ||||||| | ||||||||||||||||||| ||||
Sbjct 899 AACCCTAACTAAAAGATTG-ATTGAGTTTGG-AGATACCGAGGCTGCAAGTTTGACTGCA 956
Query 829 GATGAGCTT-G-ATAA---AA-GCGAAAAT-ATATTGCGTGAAAAACCTTTTAGCCC-AA 880
|||||||| | | || || | ||||| | | || || | | || ||
Sbjct 957 GATGAGCTCAGTAAAACTGAAAGAGAAAAAGAAACGGC-TGCATTGCGAAGTAAAAGGAA 1015
Query 881 GACCAAATTCTGAC---GAAGGAGTAGTGAACTGTAAGCAT-AAGGATT-TAAAACGTTT 935
| ||||||| | || |||||||||||| ||||| |||| ||| ||| |||| | | |
Sbjct 1016 G-CCAAATTTTTACAAAGAAGGAGTAGTGCTCTGTATGCATCAAG-ATTGTAAACC-TGT 1072
Query 936 TGGTT-TCGGATTATGTAAGAGCTGTCACGATGCTTTCATGAAAATTTCTGGTGGAGTTG 994
|| || | ||||||||| |||||||| |||||| ||||||| | ||||||||||| |||
Sbjct 1073 TGATTAT-GGATTATGTGAGAGCTGTTACGATGAATTCATGACAGTTTCTGGTGGACTTG 1131
Query 995 TTGGTGGGTCGGATCCTCCTGCTTTCCAGCGACCAGAGAAAGAGAGAATGGA--AAAA-G 1051
||||||||||||||||| || ||||||||| ||||||||||||||||||| |||| |
Sbjct 1132 AAGGTGGGTCGGATCCTCCCGCCTTCCAGCGAGCAGAGAAAGAGAGAATGGAGGAAAAAG 1191
Query 1052 CAGCTAGAGAAGTAAACGA 1070
| |||| |||| ||||||
Sbjct 1192 CTTCTAGTGAAGAAAACGA 1210
> AT1G30455.1 | Symbols: | transcription regulators;translation
initiation factors;zinc ion binding;transcription activators
| chr1:10769722-10770775 FORWARD LENGTH=765
Length=765
Score = 172 bits (93), Expect = 7e-42
Identities = 198/244 (81%), Gaps = 26/244 (11%)
Strand=Plus/Plus
Query 481 ATGTTCTACCTT-GTGCAAAACGGGAACTATGAGGAGCTTGTTGATCCTTCAATC-TTCA 538
||| |||||||| | ||||| | || |||||| | |||||||||||||||| | ||||
Sbjct 1 ATGCTCTACCTTACAG-AAAACCGCAAGTATGAGAACCTTGTTGATCCTTCAA-CTTTCA 58
Query 539 TTCCTCAATTCAT-GAACAACTTATTGAAAGGTGCACACAATATAGCAAAAAATGTCTTG 597
|||||| |||| | ||||| |||||||||||||||||||||| ||| || ||| ||
Sbjct 59 TTCCTCGATTC-TCAAACAAGTTATTGAAAGGTGCACACAATA-AGC----AA-GTCGTG 111
Query 598 GATAAGGTCTTGGGTACGGCTACAAACATTATATCTAGTATGAAGAG-AGATTGGATGCA 656
| || ||||||||| |||||||| ||||||||||||| | | ||||||||
Sbjct 112 G--AA----------ACGGCTACACACATTATAGCTAGTATGAAGAGTA-ACTGGATGCA 158
Query 657 GACCGGCCGGAAACCAAGTGGAATATGTGGAGCAGCAATTTACATAGCTGCACTTTCTCA 716
|||||| |||||||||||||||||||||||||||||| | || | |||||||||||||||
Sbjct 159 GACCGGACGGAAACCAAGTGGAATATGTGGAGCAGCACTCTATACAGCTGCACTTTCTCA 218
Query 717 TGGT 720
||||
Sbjct 219 TGGT 222
> AT1G42650.1 | Symbols: | transposable element gene | chr1:16028191-16034022
REVERSE LENGTH=5832
Length=5832
Score = 156 bits (84), Expect = 7e-37
Identities = 100/107 (93%), Gaps = 3/107 (3%)
Strand=Plus/Plus
Query 444 TTACGAGTTAGG-TTCTGTGTACTTGCAACTCTGTGAAATGTTCTACCTTGTGCAAAACG 502
|||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 937 TTACGAGTTAGGTTTC-GTGTACTTGCAACTCTGTGAAATGTTGTACCTTGTGCAAAACA 995
Query 503 GGAACTATGAGGAGCTTGTTGATCCTTCAATCTTCATTCCTCAATTC 549
|||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 996 CGAACTATGAGGAGCTTGTTGATCCTTCAATCTTCATTCTTCA-TTC 1041
Score = 89.8 bits (48), Expect = 8e-17
Identities = 57/61 (93%), Gaps = 2/61 (3%)
Strand=Plus/Plus
Query 143 AGAGCCAAGCGTCAGGTAACATAGTGACGAGTGTTCAGAGTGGG-ATTCCAAGCTCACGT 201
||||||||||||||| |||||||||||||||||||||||||||| |||| || |||||||
Sbjct 273 AGAGCCAAGCGTCAGATAACATAGTGACGAGTGTTCAGAGTGGGCATTCAAA-CTCACGT 331
Query 202 G 202
|
Sbjct 332 G 332
Score = 67.6 bits (36), Expect = 4e-10
Identities = 46/51 (90%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 388 GAAAAGAAAATTCCGTTTCTACTTATTGATTTTTCAAGCTACCTTCGAGTT 438
|||| ||||||| | |||| ||||||||||||||||||||||||||||||
Sbjct 778 GAAATGAAAATTTTGCTTCTTCTTATTGATTTTTCAAGCTACCTTCGAGTT 828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78965457285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5