BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346633
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01260.1 | Symbols: | Protein of unknown function (DUF789) ... 913 0.0
AT1G15030.1 | Symbols: | Protein of unknown function (DUF789) ... 425 2e-118
> AT2G01260.1 | Symbols: | Protein of unknown function (DUF789)
| chr2:135244-137806 REVERSE LENGTH=1662
Length=1662
Score = 913 bits (494), Expect = 0.0
Identities = 601/653 (92%), Gaps = 6/653 (1%)
Strand=Plus/Plus
Query 134 ATTCATCTCTTAAACCAAGGCGTCCAGGTGATAGTAGCGACAGCGATTTCCGGGATTCAA 193
|||||||||||||| |||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 763 ATTCATCTCTTAAATCAAGGCGTCCTGGTGATAGTAGCGACAGTGATTTTCGGGATTCAA 822
Query 194 GTAGCGATGTCAGCAGCGATAGTGATTCTGAACGGGTTTCTGCTAGTCTGGACCATATCT 253
|||||||||| ||||||||||||||||| || |||||||||||||| | ||| |||||
Sbjct 823 GTAGCGATGTTAGCAGCGATAGTGATTCCGAGCGGGTTTCTGCTAGAGTAGACTGTATCT 882
Query 254 CATTGAGGGATCAACATCAGGAAGATTCATCCAGTGATGATGGCGAACCTATAAGCTCTC 313
||||||||||||||||||||||||| || ||||||||||||||||||||| || ||||||
Sbjct 883 CATTGAGGGATCAACATCAGGAAGACTCTTCCAGTGATGATGGCGAACCTTTAGGCTCTC 942
Query 314 AGGGTAGTTTGATATTTGAGTATCTTGAAAGAGACCTTCCATACATCCGTGAACCTTTGG 373
| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 943 AAGGTCGTTTGATGTTTGAGTATCTTGAAAGAGACCTTCCATACATCCGTGAACCTTTTG 1002
Query 374 CCGACAAGGTCTTTGACCTCGCAGCTCAGTTTCCCGAGCTGTTGACGCTGAAAAGTTGTG 433
| || |||||||| |||||||||||||||||||||||||| ||||||||| ||| ||||
Sbjct 1003 CTGATAAGGTCTTGGACCTCGCAGCTCAGTTTCCCGAGCTAATGACGCTGAGAAGCTGTG 1062
Query 434 ACTTACTTCCGTCAAGCTGGTTTTCTGTGGCATGGTACCCAATTTACAGAATACCCACAG 493
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1063 ACTTACTTCGGTCAAGCTGGTTTTCTGTTGCATGGTACCCAATTTACAGAATACCCACAG 1122
Query 494 GACCGACACTCAAGGACCTGGATGCTTGTTTCTTGACGTATCATTCCCTACACACACCGT 553
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1123 GACCGACACTGAAGGACCTGGATGCTTGTTTCTTGACGTATCATTCCCTACACACATCTT 1182
Query 554 CTGGAGGTGAAGGCAGTGCACAATCAATGAGCCTTACGCAGCCAAGGGAGTGTC-ATAAG 612
||||||||||||||||| ||||||||||||||||||||| ||||||||| | | | |||
Sbjct 1183 TTGGAGGTGAAGGCAGTGAACAATCAATGAGCCTTACGCAACCAAGGGAGAG-CGAGAAG 1241
Query 613 ATGTCATTGCCTGTGTTTGGGCTCGCTTCATACAAGTTCAGAGGTTCTTTATGGACACCC 672
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1242 ATGTCATTGCCTGTGTTTGGGCTTGCTTCATACAAGTTCAGAGGTTCATTATGGACACCC 1301
Query 673 GAT-GGGGGTTTGGAGCACCAGCTCGTGAACTCTCTGTTCCAAGCTGCTGA-AAAGTGGT 730
|| ||||||| ||||||||||||||||||||||||||||||||| ||||| ||| |||
Sbjct 1302 -ATTGGGGGTTCGGAGCACCAGCTCGTGAACTCTCTGTTCCAAGCCGCTGACAAA-TGGC 1359
Query 731 TGCGTTCTTATCATGTCAGCCACCCTGACTTCCTCTTCTTCTGCCGCCGTTGA 783
||| ||||| |||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1360 TGCATTCTTGTCATGTCAGCCACCCTGATTTCCTCTTCTTCTGCCGTCGTTGA 1412
> AT1G15030.1 | Symbols: | Protein of unknown function (DUF789)
| chr1:5177529-5180049 FORWARD LENGTH=1645
Length=1645
Score = 425 bits (230), Expect = 2e-118
Identities = 433/528 (82%), Gaps = 26/528 (5%)
Strand=Plus/Plus
Query 268 CATCAGGAAGATTCATCCAGTGATGATGGCGAACCTATAAGCTCTCAGGGTAGTTTGATA 327
||||| |||||||| || |||||||||||||| ||| |||||||||| ||| ||||||||
Sbjct 928 CATCAAGAAGATTCGTCTAGTGATGATGGCGAGCCTTTAAGCTCTCAAGGTCGTTTGATA 987
Query 328 TTTGAGTATCTTGAAAGAGACCTTCCATACATCCGTGAA-CCTTTGGCCGACAAGGTCTT 386
||||||||||||||| | || ||||| ||| |||||||| ||||| ||||||||| | |
Sbjct 988 TTTGAGTATCTTGAACGTGATCTTCCTTACGTCCGTGAACCCTTT-GCCGACAAGATGTC 1046
Query 387 TGACCTCGCAGCTC-AG-TTTCCCGAGCTGTTGACGCTGAA-AAGTTGTGACTTACTTCC 443
|||||| || ||| || |||||||||||| |||||| || ||| ||||| || |||||
Sbjct 1047 TGACCTTGC--CTCTAGATTTCCCGAGCTGAAGACGCT-AAGAAGCTGTGATTTGCTTCC 1103
Query 444 GTCAAGCTGGTTTTCTGTGGCATGGTACCCAATTTACAGAATACCCACAGGACCGACACT 503
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1104 TTCAAGCTGGTTTTCTGTGGCATGGTACCCAATTTACAAAATACCCACAGGACCGACACT 1163
Query 504 CAAGGACCTGGATGCTTGTTTCTTGACGTATCATTCCCTACACACACCGTCTGGAGGTGA 563
|||||| |||||||||||||||||||| ||||||||||| |||||||| | | ||||
Sbjct 1164 CAAGGATCTGGATGCTTGTTTCTTGACCTATCATTCCCTTCACACACCCTTTCAAGGTCC 1223
Query 564 AGGCAGTG-CA-CAA--TCAATG-A-GCCTTACGCAGCCAAGGGA--GTGTC-ATAAGAT 614
|||| || || || || ||| | | | |||||||||||| |||| | |||||
Sbjct 1224 AGGC-GTTACAACAGGGTCTATGCATGTGGT--GCAGCCAAGGGAAAGTGTTGAGAAGAT 1280
Query 615 GTCATTGCCTGTGTTTGGGCTCGCTTCATACAAGTTCAGAGGTTCTTTATGGACACCCGA 674
| | ||||||| ||||| ||||| ||||||||||| ||||||||| |||||||| |
Sbjct 1281 GGAACTGCCTGTCTTTGGTCTCGCCTCATACAAGTTGAGAGGTTCTGTATGGACAAGCTT 1340
Query 675 TGGGGGTTTGGAGC-ACCAGCTCGTGAACTCTCTGTTCCAAGCTGCTGAAAAGTGGTTGC 733
||| || | || || ||||||||| ||||||||| |||||||| || || || ||| ||
Sbjct 1341 TGGTGGCTCGG-GCCACCAGCTCGCGAACTCTCTCTTCCAAGCCGCAGATAATTGGCTGA 1399
Query 734 G-TT-CTTATCATGTCAGCCACCCTGACTTCCTCTTCTTCTGCCGCCG 779
| || | | || |||| ||| ||||| ||| ||||||||||||||||
Sbjct 1400 GGTTGCGT--CAAGTCAACCATCCTGATTTCATCTTCTTCTGCCGCCG 1445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38077483426
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5