BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346639
Length=606
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01430.1 | Symbols: ATHB17, ATHB-17, HB17 | homeobox-leucine... 989 0.0
> AT2G01430.1 | Symbols: ATHB17, ATHB-17, HB17 | homeobox-leucine
zipper protein 17 | chr2:187798-190369 REVERSE LENGTH=828
Length=828
Score = 989 bits (535), Expect = 0.0
Identities = 586/610 (96%), Gaps = 5/610 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATTTTACCCGAAAACTCTTCAAACTTGGATCTTACTATCTCCGTTCCAGGCTTC 60
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 ATGGCGATTTTGCCGGAAAACTCTTCAAACTTGGATCTTACTATCTCCGTTCCAGGCTTC 279
Query 61 TCTTCCTCCCCTCCCTCCGATGAAGGAAGTGGCGGAGGAAAAGACCAGCTAAAGCTAGAC 120
||||| ||||||| |||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 280 TCTTCATCCCCTCTCTCCGATGAAGGAAGTGGCGGAGGAAGAGACCAGCTAAGGCTAGAC 339
Query 121 ATGAATCGATTGCCGTCGTCTGAAGACGGAGACGATGAAGAATTCAGTCAC---GATGGC 177
|||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 340 ATGAATCGGTTACCGTCGTCTGAAGACGGAGACGATGAAGAATTCAGTCACGATGATGGC 399
Query 178 TCTGCTCCTCCGCGAAAGAAACTTCGTCTAACCAGAGAACAGTCACGTCTTCTCGAAGAT 237
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 400 TCTGCTCCTCCGCGAAAGAAACTCCGTCTAACCAGAGAACAGTCACGTCTTCTTGAAGAT 459
Query 238 AGTTTCAGACAGAATCATACCCTTAATCCCAAACAAAAGGAAGCACTTGCCAAGCATTTG 297
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 460 AGTTTCAGACAGAATCATACCCTTAATCCCAAACAAAAGGAAGTACTTGCCAAGCATTTG 519
Query 298 ATGCTACGGCCAAGACAAATTGAAGTTTGGTTTCAAAACCGTAGAGCAAGGAGCAAATTG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 ATGCTACGGCCAAGACAAATTGAAGTTTGGTTTCAAAACCGTAGAGCAAGGAGCAAATTG 579
Query 358 AAGCAAACCGAGATGGAATGCGAGTACCTCAAAAGGTGGTTTGGTTCATTAACGGA-GCA 416
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 580 AAGCAAACCGAGATGGAATGCGAGTATCTCAAAAGGTGGTTTGGTTCATTAACGGAAG-A 638
Query 417 AAACCACAGGCTCCATAGAGAAGTAGAAGAGCTTAGAGCCATGAAGGTTGGCCCAACAAC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 AAACCACAGGCTCCATAGAGAAGTAGAAGAGCTTAGAGCCATGAAGGTTGGCCCAACAAC 698
Query 477 AGTGAACTCTGCCTCGAGCCTCACTATGTGTCCCCGCTGCGAGCGAGTTACCACTGCAGC 536
|||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| ||
Sbjct 699 GGTGAACTCTGCCTCGAGCCTTACTATGTGTCCTCGCTGCGAGCGAGTTACCCCTGCCGC 758
Query 537 GAGCCCTTCGAGGGCGGTGGTGCCGGTTCCGGCCAAGAAAACGTTTCCGCCGCAAGAGCG 596
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 759 GAGCCCTTCGAGGGCGGTGGTGCCGGTTCCGGCTAAGAAAACGTTTCCGCCGCAAGAGCG 818
Query 597 TGATCATTGA 606
||||| ||||
Sbjct 819 TGATCGTTGA 828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29186039407
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5