BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346720
Length=1908
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70770.1 | Symbols: | Protein of unknown function DUF2359, ... 342 6e-93
AT3G11880.1 | Symbols: | Protein of unknown function DUF2359, ... 134 4e-30
> AT1G70770.1 | Symbols: | Protein of unknown function DUF2359,
transmembrane | chr1:26688230-26691277 REVERSE LENGTH=2317
Length=2317
Score = 342 bits (185), Expect = 6e-93
Identities = 520/675 (77%), Gaps = 50/675 (7%)
Strand=Plus/Plus
Query 352 TCTAAGGTGGCAATGTTTGTTACATTAGCAATGGTAGTGCGTAGCAAACCTCG-TGTC-T 409
||| |||||||||| |||||| ||||||| |||||| ||||||| || ||| | || | |
Sbjct 891 TCTCAGGTGGCAATATTTGTTGCATTAGCGATGGTATTGCGTAGGAAGCCT-GATG-CTT 948
Query 410 TGACTAAGGTTTTACCCTCTCTGAGGTTGAGGCGTATCTATAAAGGACAGGGCCAGATTC 469
||||||| || || || |||||||| || | || ||| | || |||| || |||
Sbjct 949 TGACTAATGTATTGCCAACTCTGAGGGAGAATCCTAAGTATCAGGGTCAGGATAAGCTTC 1008
Query 470 CGCTTACAGTTTGGTTGATAACTCAGGCCTCCAAAGATGATTTATCTGTAGGCTTGCT-T 528
|| ||||||||||| |||| ||||||||||| ||| |||| || ||||||||||| | |
Sbjct 1009 CGGTTACAGTTTGGATGATGGCTCAGGCCTCCCAAGGTGATATAGCTGTAGGCTTG-TAT 1067
Query 529 TCATGGGCGCACAACTTGTTACCTCTAGTCGG----CAG--C---AACCCCCAGTCAACT 579
|||||||| ||||||||||||||| | ||||| || | ||||| |||||||
Sbjct 1068 TCATGGGCTCACAACTTGTTACCTGTTGTCGGTAATAAGAACTGTAACCCTCAGTCAAGG 1127
Query 580 GATGTCATCCT-CAAGTTGGTTGAGAAGATTTTGGCCAAACCAGATGATCAG-GCCAGAT 637
||| ||||||| | ||||||||||||| |||||| | || ||| | | || | ||| |
Sbjct 1128 GATCTCATCCTGC-AGTTGGTTGAGAAAATTTTGACGAATCCAAAGGCTC-GTACCATAC 1185
Query 638 TTGTAAAAACTCCTGTTTGGCA-GGAAATGCGACTT-ATTCCACCTCAGTCATTTGAGAT 695
||||||| ||||| || | ||| | ||| || |||||||||| |||||||||||
Sbjct 1186 TTGTAAATGGAGCTGTTAGGAAGGGAGA-GCG-TTTGATTCCACCTCCTTCATTTGAGAT 1243
Query 696 CTTGTTGCGGCTTACATTCCCTGCA--AGC--CTAGAGCCTA--CTACA-AGTAGGTTTG 748
||||||||||||||||||||||||| | | | |||| | ||||| || |||||||
Sbjct 1244 CTTGTTGCGGCTTACATTCCCTGCATCATCTGCAAGAGTAAAGGCTACAGAG-AGGTTTG 1302
Query 749 TGGCAATTTATCCCTTGCTGAAAAAAGTGGCTCTTGTCCG-TACATCAAGAAGCCAGGCA 807
|||||| ||||||||||||||| |||||||||||| | | | || || ||||| ||||
Sbjct 1303 AGGCAATATATCCCTTGCTGAAAGAAGTGGCTCTTG-CTGGTGCACCAGGAAGCAAGGCG 1361
Query 808 AT-AGA-A-G--A-------GATATTCACTTTTTCTTTGAGATTATCTGGAGAAGAAGGA 855
|| | | | | | ||||||||||||| || ||| |||| ||||||||| | |
Sbjct 1362 ATGAAACAAGTCACACAACAGATATTCACTTTTGCTCTGAAATTAGCTGGAGAAG--G-A 1418
Query 856 AATACTGTTTTAGCCGAGGAAGCTAGATCAATCGCTCTCTGGTCTCTGACCGTAAACAAG 915
||| ||||||||||| ||||||||| | |||| ||| |||||||| ||||| ||||
Sbjct 1419 AATCCTGTTTTAGCCAAGGAAGCTACAGCAATTGCTATCTGGTCTGTGACCCAAAACTTT 1478
Query 916 GATTGCTGGAAGCACTGGGAGAATCTCTACGATCAGAATCTAAAAGCGACTATTGCTCTT 975
|||||||| ||||||||||| ||||||||| | ||||||| |||| | | ||||| ||
Sbjct 1479 GATTGCTGCAAGCACTGGGACAATCTCTACAAGGAGAATCTGGAAGCTAGTGTTGCTGTT 1538
Query 976 CTTAAAATA-CTTGT 989
||||||| | |||||
Sbjct 1539 CTTAAAA-AGCTTGT 1552
Score = 198 bits (107), Expect = 1e-49
Identities = 193/234 (82%), Gaps = 8/234 (3%)
Strand=Plus/Plus
Query 1027 CAAAAGATATACACTTTTTCTTTGAGATTAGCTGCAGAAGGAAATCCTGTTTTACCCCAG 1086
||| |||||| ||||||| || ||| |||||||| ||||||||||||||||||| || ||
Sbjct 1377 CAACAGATATTCACTTTTGCTCTGAAATTAGCTGGAGAAGGAAATCCTGTTTTAGCCAAG 1436
Query 1087 CAAGCTACCGCAATCGCTATCAGGTCTCTGA-CCATAATCTTTGATTGCTGGAAGCAGAG 1145
||||||| ||||| |||||| ||||| ||| ||| || |||||||||||| ||||| |
Sbjct 1437 GAAGCTACAGCAATTGCTATCTGGTCTGTGACCCA-AAACTTTGATTGCTGCAAGCACTG 1495
Query 1146 GGGCAATATCT-CTGA-GATGAATCTAAAAGCTAGTGTTGCTGTTCTTAAAAAGCTTGTA 1203
|| |||| ||| | | || |||||| |||||||||||||||||||||||||||||||
Sbjct 1496 GGACAATCTCTAC-AAGGA-GAATCTGGAAGCTAGTGTTGCTGTTCTTAAAAAGCTTGTT 1553
Query 1204 GAGAGA-TGGAAGGATCATTCCCTCGATCTATCATTATCACTGATTGATACTCT 1256
|| ||| ||||| || ||||| || | ||||||| ||||| || |||| ||||
Sbjct 1554 GA-AGAATGGAAAGAGCATTCGGTCAAACTATCATCATCACCGAATGATGCTCT 1606
> AT3G11880.1 | Symbols: | Protein of unknown function DUF2359,
transmembrane | chr3:3751660-3754060 FORWARD LENGTH=1707
Length=1707
Score = 134 bits (72), Expect = 4e-30
Identities = 137/167 (82%), Gaps = 10/167 (6%)
Strand=Plus/Plus
Query 1044 TTCTTTGAGATTAGCT-GCAGAAGGAAATCCTGTTTTACCCCAGCAAGCTACCGCAATCG 1102
|||||||| | ||||| | |||| |||||| ||||||| || || ||||||| |||||||
Sbjct 946 TTCTTTGATAATAGCTGGAAGAA-GAAATCTTGTTTTAGCCAAGGAAGCTACAGCAATCG 1004
Query 1103 CTATCAGGTCTCTGACC-ATAATCTTTGATTGCTGGAAGCAGAGGGGCAATA-TCT-CTG 1159
|| || ||||||||||| | || | | |||||||| |||||| ||| || | ||| ||
Sbjct 1005 CTGTCTGGTCTCTGACCGA-AAACGTAGATTGCTGCAAGCAG-TGGGAAAAACTCTATTG 1062
Query 1160 AGATGAATCTAA-AAGCTAGTGTTGCTGTTCTTAAAAAGCTTGTAGA 1205
|| |||| || ||||||||||||||||||||||||||||||||||
Sbjct 1063 GGA-GAAT-AAAGAAGCTAGTGTTGCTGTTCTTAAAAAGCTTGTAGA 1107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94477425690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5