BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg346725

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G12875.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   169    3e-41
  AT2G06420.1 | Symbols:  | Domain of unknown function (DUF1985) ...  67.6    1e-10


> AT2G12875.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:5289411-5291470 
REVERSE LENGTH=978
Length=978

 Score =  169 bits (91),  Expect = 3e-41
 Identities = 200/248 (81%), Gaps = 26/248 (10%)
 Strand=Plus/Plus

Query  119  CGGAGCAGCCATCCTCGACGGCGCAACCATCCCTGA-CAGAGCAAAATAAGGCAATTGAG  177
            ||||| ||||||||||||||| | | |||| | | | |||||||||||||||||||||||
Sbjct  473  CGGAGGAGCCATCCTCGACGGAGGAGCCAT-CATCATCAGAGCAAAATAAGGCAATTGAG  531

Query  178  GGAGGAGGAGTTGAAGAACAACAAGTCCTGGGGACCTTAAGTCCGGTTTTagaag-agtc  236
            |||||||||  ||||||||  ||| ||||||   |||||| |||||||||||| | ||| 
Sbjct  532  GGAGGAGGAACTGAAGAAC--CAA-TCCTGG---CCTTAACTCCGGTTTTAGAGGCAGTG  585

Query  237  -a-ga--------c--a-a-gaatgaagaagaaaattctgagaagaatgaggaagaagag  282
             | ||        |  | | |||||| |||||||| ||||||||| ||||||||||| ||
Sbjct  586  GAAGAAGAGAAGTCTTACAAGAATGAGGAAGAAAAGTCTGAGAAGGATGAGGAAGAAAAG  645

Query  283  agtggcgaagaagagagcgaagaagaagacaaagaagaaga-ga-aa-gaagaagggaat  339
            ||||  ||||||||||||||||||||||| ||||||||||| || || |||||||  || 
Sbjct  646  AGTGAAGAAGAAGAGAGCGAAGAAGAAGAGAAAGAAGAAGAAGAGAAAGAAGAAGAAAAA  705

Query  340  gaggaagg  347
            || |||||
Sbjct  706  GAAGAAGG  713


> AT2G06420.1 | Symbols:  | Domain of unknown function (DUF1985) 
| chr2:2538743-2540365 FORWARD LENGTH=1470
Length=1470

 Score = 67.6 bits (36),  Expect = 1e-10
 Identities = 92/116 (79%), Gaps = 16/116 (14%)
 Strand=Plus/Plus

Query  171  AATTGAGGGAGGAGGAGTTGAAGAACAACAAGTCCTGGGGACCTTAAGTCCGGTTTTaga  230
            ||||||||||||||||||||||||||||    ||| |   ||| | ||||||||||||||
Sbjct  259  AATTGAGGGAGGAGGAGTTGAAGAACAA----TCCCG---ACCATCAGTCCGGTTTTAGA  311

Query  231  agagtcagacaagaatgaagaagaaaattctgagaagaatgaggaagaagagagtg  286
             | | || |   ||| ||||  |||  | |||| ||||||||||||||||||||||
Sbjct  312  -G-G-CA-ATG-GAA-GAAGG-GAAG-T-CTGACAAGAATGAGGAAGAAGAGAGTG  358



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22253727121


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5