BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346783
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02660.1 | Symbols: | F-box associated ubiquitination effec... 876 0.0
AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6... 706 0.0
AT2G16450.1 | Symbols: | F-box and associated interaction doma... 682 0.0
AT2G02890.1 | Symbols: | F-box family protein | chr2:843913-84... 431 9e-120
AT2G16220.1 | Symbols: | F-box and associated interaction doma... 374 1e-102
AT2G23160.1 | Symbols: | F-box family protein | chr2:9862470-9... 215 1e-54
AT3G56890.1 | Symbols: | F-box associated ubiquitination effec... 75.0 2e-12
AT1G47300.1 | Symbols: | F-box family protein | chr1:17339561-... 63.9 4e-09
AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-... 56.5 6e-07
AT1G30935.1 | Symbols: | pseudogene, F-box protein family, con... 54.7 2e-06
> AT2G02660.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:738504-739769 FORWARD LENGTH=1266
Length=1266
Score = 876 bits (474), Expect = 0.0
Identities = 722/839 (86%), Gaps = 27/839 (3%)
Strand=Plus/Plus
Query 102 GACCAGGTCCTCCGCTAAGCCGCGCCTCTTATTCGCCATCGCAGAAAACGGCGACGATAG 161
|||||||||||||||||||||| | |||||||||||||||||||| || | || ||
Sbjct 99 GACCAGGTCCTCCGCTAAGCCGAGTCTCTTATTCGCCATCGCAGACTAC-G-GA--AT-- 152
Query 162 CGCAGAAACTTGTGGTGTGTGGAGCTTCTTCTCATCGCCTCAGTTTGAGAATCCATATGA 221
| || || | | || | || |||||||||||||||||| ||||||||||||||||
Sbjct 153 TGAAG-AAGAT-TACAGTAT-GAAATTCTTCTCATCGCCTCAGCTTGAGAATCCATATGA 209
Query 222 GAAATCGTCGTCGACTCTTGTAGCAGCTGCTGAATTTCATGTGAAGTTCTCTCCAGA-AA 280
|||||||||| | |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 210 GAAATCGTCGCCAACTCTTGTAGCAGCCGCTGAATTTCATGTGAAGTTCTCTCCAGACAA 269
Query 281 ATT--TGA-GGATCAATTATTATGGTGACATAAAATATTTTTCAATTGGCTACGCTTCTG 337
|| | | |||||| ||| | ||| || ||||||||||||||||||||| ||||
Sbjct 270 GTTAAT-ACCAATCAATCATTCTTACGACCCAAGATATTTTTCAATTGGCTACGCCTCTG 328
Query 338 GCTTGATCTATATCTATGGTTG-TCGATACCAAGCTAGACCTCTGATATGTAACCCCAAC 396
||||||| ||||||||||| || ||||||| ||||||||||| |||||||||||||||
Sbjct 329 GCTTGATATATATCTATGG-TGATCGATACGTGGCTAGACCTCTAATATGTAACCCCAAC 387
Query 397 ACAGGACGGTATGCAATCTTACCTAATCGTTATACTTATAGAAAAGCGTATAGCTTTTTC 456
||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 388 ACAGGACGGTATGTGATCTTACCTAATCGGTATACTTACAGAAAGGCGTATAGCTTTTTC 447
Query 457 GGGTTTGACCCCATTGACAAGCAATACAAGGCCTTGTCCATC-CGTTATCCATCTGGTCC 515
||||||||||| |||| ||||||||||||||| |||||||| | ||||||||||| |||
Sbjct 448 GGGTTTGACCCGATTGGCAAGCAATACAAGGCATTGTCCATTGC-TTATCCATCTGATCC 506
Query 516 AGGACGTAACAAAATTCTTACATTTGGAGATGGAGATCTCACGTGGAGAAAGATCAAATT 575
|| ||| | ||||| |||||||| |||||||||||||| || ||||||||||||||||
Sbjct 507 TGGTCGTCATAAAATACTTACATTAGGAGATGGAGATCTGACATGGAGAAAGATCAAATG 566
Query 576 TCCCTTAGGACGACCTGAAATTAAGAGTGATGGGATTTGCATCAATGGGGTTTTGTATTT 635
|||| || |||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct 567 TCCCGTACCACGACCTGGTATTAAGGGTGATGGGATATGCATCAATGGGGTTTTGTATTT 626
Query 636 CTTAGGTGAGATAGGTGAAGG-ATCTTGTGATTATGTGATATTTTGCTTTGATGTTAGGT 694
||||| ||||| | ||| | | | ||||||||||||| ||||||||||||||||||
Sbjct 627 CTTAGCTGAGAGAAATGA-GCTAGAGTCTGATTATGTGATAGTTTGCTTTGATGTTAGGT 685
Query 695 CTGAGAAATTCACGTGTATTTATGTAG-GAAGGTTTTGTCGATTGATAAACTACAAGGGC 753
||||||||||||| | |||| | |||| || || ||||||||||||||||||||||||||
Sbjct 686 CTGAGAAATTCACATATATTGACGTAGAGA-GGATTTGTCGATTGATAAACTACAAGGGC 744
Query 754 AAATTAGCTGTGATTTATTGGGAGGATGATGTCGACATCTATGAGATCTG-TGTT-TA-- 809
||||||||| |||||||||||||||||||||||||||| |||||||| | | | |
Sbjct 745 AAATTAGCTATGATTTATTGGGAGGATGATGTCGACATTTATGAGAT-TAATCATATGGC 803
Query 810 TGGGAAGGATCTCGATGAGTATTTGGAGGAAAATCTCGACGTTGATGCCACTAACGAGTT 869
||||||| |||| ||| |||||||||||||||||||||| |||||||||||||| |||||
Sbjct 804 TGGGAAGAATCTTGATAAGTATTTGGAGGAAAATCTCGATGTTGATGCCACTAATGAGTT 863
Query 870 GCATTTGTGGGTTCTAGAGGATGTTGAGAAAAAGAAATGGTCTAAATATGCCTACACTT 928
|||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 864 GCATGTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGTCTAAATATGCCTACACTT 922
Score = 472 bits (255), Expect = 5e-132
Identities = 315/343 (92%), Gaps = 7/343 (2%)
Strand=Plus/Plus
Query 940 TGGTCTAAATATGCCTACACTTGGACCGATGATACATTCTTCCGTCGTCACCTTTCCATC 999
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TGGTCTAAATATGCCTACACTTGGACCGATGATACATTCTTCCGTCGTCACCTTTCCATT 960
Query 1000 GCTGGAGCCACTGCTTCAGTTGAAATAGTGTTTTCCATGCGTAAGTATACATCTAAACAA 1059
||||||||||||| ||| | ||||||||||||||| || || ||||| ||||||||||||
Sbjct 961 GCTGGAGCCACTGTTTCGGGTGAAATAGTGTTTTCGATACGCAAGTACACATCTAAACAA 1020
Query 1060 CCGTTTTATGTTTTTTACTTCAATCCCGAAAGGAACACTCTCCAACGTGTTGAAATCCAA 1119
|||||||||||||| ||||||||||||||| |||||||||||||||||| |||| ||||
Sbjct 1021 CCGTTTTATGTTTTCTACTTCAATCCCGAATCGAACACTCTCCAACGTGTAGAAACCCAA 1080
Query 1120 GGTTTTGGTGAAGCGTTTAAGG-A-AA-CTTGTAGCGTTCGCACCTTTGTAAACCACGTA 1176
|||||||||||||| ||||||| | || ||||||||||||||||||||||||||||||||
Sbjct 1081 GGTTTTGGTGAAGCATTTAAGGCAGAAACTTGTAGCGTTCGCACCTTTGTAAACCACGTA 1140
Query 1177 GAGGATCTTGATGTTAACGATTTAAAACAACTCAAGTCAGTCCATCCTCCATTGGTGGAG 1236
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1141 GAGAATCTTGATGTTAACGATTTAAAACAACTCAAGTCAGGCCATCCTCCATTGGTGCAG 1200
Query 1237 CCAGAATATTAT-GATCGATTC-GAATCAGAATCAGAATCAGA 1277
|||||| ||||| | || || | || ||||| |||||||||||
Sbjct 1201 CCAGAAAATTATTG-TCTAT-CAGACTCAGATTCAGAATCAGA 1241
> AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6818205
REVERSE LENGTH=1414
Length=1414
Score = 706 bits (382), Expect = 0.0
Identities = 711/862 (82%), Gaps = 53/862 (6%)
Strand=Plus/Plus
Query 101 TGACCAGGTCCTCCGCTAAGCCGCGCCTCTTATTCGCCATCGCAGA-AAACGGCGACGAT 159
|||||||||||||| ||||||||||||||||||||||||| ||||| ||| | | ||||
Sbjct 273 TGACCAGGTCCTCCACTAAGCCGCGCCTCTTATTCGCCATGGCAGAGAAA-GTCAACGA- 330
Query 160 AGCGCAGAAACTTGTGGTGTGTGGAGCTTCTTCTC-ATCGCCTCAGTTTGAGAATCCATA 218
|| | | |||| | |||||||||| |||||||| | |||| ||| |||||||||||||
Sbjct 331 AGAG-AAAAAC---T-GTGTGTGGAGGTTCTTCTCGA-CGCCACAGCTTGAGAATCCATA 384
Query 219 TGAGAAATCGTCGTCGACTCTTGTAGCAGCTGCTGAATTTCATGTGAAGTTCTCTCCAGA 278
||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 385 TGAGAAATCCTCATCGACTCTTGTAGCAGCCGCTGAATTTCATGTTAAGTTCTCTCCAGA 444
Query 279 -AA-ATTTGAGGATCAATTATTATGGTGACATAAAATATTTTTCAATTGGCTACGCTTCT 336
|| | | | ||| | ||| | |||| ||||||||||||||||||||||||| ||
Sbjct 445 CAAGCTAT-A-TATCTGTCATTGTTATGACCTAAAATATTTTTCAATTGGCTACGCCTCG 502
Query 337 GGCTTGATCTATATCTATGGTTG-TCGATACCAAGCTAGACCTCTGATATGTAACCCCAA 395
|| ||||||||| | ||||| || |||| | | |||| |||||| |||||||||||| |
Sbjct 503 GGGTTGATCTATTTATATGG-TGATCGAGGCGAGGCTACACCTCTAATATGTAACCCC-A 560
Query 396 C-ACAGGACGGTATGCAATCTTACCTAATCGTTATACTTATAGAAAAGCGTATAGCTTTT 454
| |||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 561 CTACAGGACGGTATGCCATCTTACCTAATCGGTATACTTACAGAAAGGCGTATAGCTTTT 620
Query 455 TCGGGTTTGACCCCATTGACAAGCAATACAAGGCCTTGTCCATCCGTTATCCATCTGGTC 514
|||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 621 TCGGATTTGACCCGATTGACAAGCAATACAAGGCATTGTCCATATTTTATCCATCTGGTC 680
Query 515 CAGGACGTAACAAAATTCTTACATTTGGAGATGGAGATCTCACGTGGAGAAAGATCAAAT 574
| || | || ||||||||||||||||| | |||| || | | |||||||||||| ||||
Sbjct 681 CTGGTCATAGTAAAATTCTTACATTTGGGGCTGGACATATGAAGTGGAGAAAGAT-AAAT 739
Query 575 T-TCCCTTA-G----GA-CGACCTGAAATTAAGAGTGATGGGATTTGCATCAATGGGGTT 627
| ||||||| | || ||| ||| ||||||||||| ||||| ||||||||||| |||
Sbjct 740 TGTCCCTTACGATATGATAGACATGATATTAAGAGTGAAGGGATATGCATCAATGGAGTT 799
Query 628 TTGTATTTCTTAGGT-G-A-----GATAG-GTGAAGGA---TC-T----T-G----TGAT 666
||||||| ||||||| | | ||| | || ||||| || | | | ||||
Sbjct 800 TTGTATTACTTAGGTAGCACGTCGGATTGTGTTAAGGATGGTCATGGCATAGTATCTGAT 859
Query 667 TATGTGATATTTTGCTTTGATGTTAGGTCTGAGAAATTCACGTGTATTTATGTAGGAAGG 726
||||||||| ||||||||||| ||||||||||||||||||||| |||| | |||| ||||
Sbjct 860 TATGTGATAGTTTGCTTTGATATTAGGTCTGAGAAATTCACGTTTATTGACGTAGAAAGG 919
Query 727 TTTTGTCGATTGATAAACTACAAGGGCAAATTAGCTGTGATTTATTGGGAGGATGATGTC 786
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 920 TTTTGTCGATTGATCAACTATAAGGGAAAATTAGCTGTGATTTATTGGGAGGATGATGTC 979
Query 787 GACATCTATGAGATCTGTGTTTATGGGAAGGATCTCGATGAGTATTTGGAGGAAAATCTC 846
||||| ||| || | | | || || | | || |||| || ||| ||||| | ||| |
Sbjct 980 GACATTTATAAGCT-T-TATT-ATTCG--G-ATGTCGACGAATATGTGGAGTATAATATT 1033
Query 847 GACGTTGATGCCACTAACGAGTTGCATTTGTGGGTTCTAGAGGATGTTGAGAAAAAGAAA 906
||| ||||| || ||| ||||||| | |||||||||||||||||||| ||||| || ||
Sbjct 1034 AACGATGATGACATTAATGAGTTGCGTGTGTGGGTTCTAGAGGATGTTAAGAAACAGCAA 1093
Query 907 TGGTCTAAATATGCCTACACTT 928
||||| ||||||||||||||||
Sbjct 1094 TGGTCGAAATATGCCTACACTT 1115
Score = 403 bits (218), Expect = 2e-111
Identities = 272/298 (91%), Gaps = 4/298 (1%)
Strand=Plus/Plus
Query 940 TGGTCTAAATATGCCTACACTTGGACCGATGATACATTCTTCCGTCGTCACCTTTCCATC 999
||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1094 TGGTCGAAATATGCCTACACTTGGACCGATGATAGATTCTTCCGTCGTCGTGTTTCCATC 1153
Query 1000 GCTGGAGCCACTGCTTCAGTTGAAATAGTGTTTTCCATGCGT-AAGTATACATCTAAACA 1058
||||||| |||||||| | ||||||||||||||| |||| | || |||||| |||| ||
Sbjct 1154 GCTGGAGGGACTGCTTCGGGTGAAATAGTGTTTTCGATGC-TCAAATATACACCTAAGCA 1212
Query 1059 ACCGTTTTATGTTTTTTACTTCAATCCCGAAAGGAACACTCTCCAACGTGTTGAAATCCA 1118
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 ACCGTTTTATGTTTTCTACTTCAATCCCGAAAGGAACACTCTCCAACGTGTTGAAATCCA 1272
Query 1119 AGGTTTTGGTGAAGCGTTTAAGGAAACTTGTAGCGTTCGCACCTTTGTAAACCACGTAGA 1178
|||||||||||||| ||| ||| |||||||||| ||| ||||||||||||||||||||||
Sbjct 1273 AGGTTTTGGTGAAGTGTTAAAGAAAACTTGTAGAGTTTGCACCTTTGTAAACCACGTAGA 1332
Query 1179 GGATCTTGATGTTAACGA-TTTAAAACAACTCAAGTCAGTCCATCCTCCATTGGTGGA 1235
||||||| ||||| |||| |||||| |||||||||||||||||||| |||||||||||
Sbjct 1333 GGATCTTAATGTTCACGACTTTAAA-CAACTCAAGTCAGTCCATCCCCCATTGGTGGA 1389
> AT2G16450.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:7131520-7132803 REVERSE LENGTH=1284
Length=1284
Score = 682 bits (369), Expect = 0.0
Identities = 712/868 (82%), Gaps = 62/868 (7%)
Strand=Plus/Plus
Query 101 TGACCAGGTCCTCCG-CTAAGCCGCGCCTCTTATTCGCCATCGCAGA-AAACGGCGACGA 158
|||||||||||| || ||||||||||||||||||||||||||||||| ||| ||| || |
Sbjct 140 TGACCAGGTCCT-CGACTAAGCCGCGCCTCTTATTCGCCATCGCAGAGAAA-GGCAAC-A 196
Query 159 TAGCGCAGAAACTTGTGGTGTGTGGAGCTTCTTCTCATCGCCTCAGTTTGAGAATCCATA 218
| | ||||| | |||||||||| |||||||| ||||| ||| |||||||||||||
Sbjct 197 -A-AG-AGAAA-GACT-GTGTGTGGAGGTTCTTCTCGTCGCCACAGCTTGAGAATCCATA 251
Query 219 TGAGAAATCGTCGTCGACTCTTGTAGCAGCTGCTGAATTTCATGTGA-AGTTCTCTCCAG 277
||||||||| || ||||||||||||||| | |||||||||||||||| | ||||||||||
Sbjct 252 TGAGAAATCCTCATCGACTCTTGTAGCAACCGCTGAATTTCATGTGAGA-TTCTCTCCAG 310
Query 278 AAAATTTGAG-GATCAATTATTATGGTGACATAAAATATTTTTCAATTGGCTACGC-TTC 335
| ||| | | |||| | ||||| |||| ||||||||||||||||||| || || ||
Sbjct 311 ACAATCT-ACTGATCTGTCATTATTATGACCTAAAATATTTTTCAATTGGTTATGCCTT- 368
Query 336 TGGCTTGATCTATATCTATGGTTGTCGATACCAAGCTAGACCTCTGATATGTAACCCCAA 395
|||||||||||||||||||||| |||| || ||||||||||| |||||||||||||
Sbjct 369 TGGCTTGATCTATATCTATGGTAATCGAGGCCGGGCTAGACCTCTAATATGTAACCCCA- 427
Query 396 C-ACAGGACGGTATGCAATCTTACCTAATCGTTATACTTATAGAAAAGCGTATAGCTTTT 454
| |||||||||||||| |||||||||||||| |||||||| ||||| |||| ||||||||
Sbjct 428 CTACAGGACGGTATGCCATCTTACCTAATCGGTATACTTACAGAAAGGCGTTTAGCTTTT 487
Query 455 TCGGGTTTGACCCCATTGACAAGCAATACAAGGCCTTGTCCATCCGTT-ATCCATCTGGT 513
||||||||||||| |||||||||||||||||||| |||||||| ||| |||||||||||
Sbjct 488 TCGGGTTTGACCCAATTGACAAGCAATACAAGGCATTGTCCATG-GTTTATCCATCTGGT 546
Query 514 CCAGGACGTAACAAAATTCTTACATTTGGAGATGGAGATCTCACGTGGAGAAAGATCAAA 573
|| || | || | | || |||||||||||| ||||||||| | |||||||| ||| |||
Sbjct 547 CCTGGTCATAGTAGAGTTATTACATTTGGAGCTGGAGATCTGAAGTGGAGAAGGATAAAA 606
Query 574 T-TTCCCTTAGGACGACCTGAAATTAAGAGTGATGGGATTTGCATCAATGGGGTTTTGTA 632
| ||| || | |||| ||| ||||||||||| ||| | || |||||||||||||||||
Sbjct 607 TGTTCA-TT-G--CGACATGATATTAAGAGTGAAGGGGTATGTATCAATGGGGTTTTGTA 662
Query 633 TTTCTTAGGTGAGA--T---A--GG--T-G----AA-GG-A-TCT--T---GT--GATTA 668
|| ||||||||| | | | || | | || || | || | || | |||
Sbjct 663 TTACTTAGGTGACACGTCGGATTGGAGTCGCGTTAATGGTAATCACGTAACGTCTGGTTA 722
Query 669 TGTGATATTTTGCTTTGATGTTAGGTCTGAGAAATTCACGTGTATTTATGTAGGAAGGTT 728
| ||||| |||||||||||||||||||||| |||||||| | |||| | ||| ||||||
Sbjct 723 TATGATAGTTTGCTTTGATGTTAGGTCTGAAAAATTCACCTTTATTGACGTAAAAAGGTT 782
Query 729 TTGTCGATTGATAAACTACAAGGGCAAATTAGCTGTGATTTATTGGGAGGATGATGTCGA 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 TTGTCGATTGATAAACTACAAGGGCAAATTAGCTGTGATTTATTGGGAGGATGATGTCGA 842
Query 789 CAT-CTATGAGATCTGTGTTT-AT---GGG-A-AGGATCTCGATGAGTATTTGGAGGAA- 840
||| | | ||| | | | || | ||| | || || |||| || ||| ||||| ||
Sbjct 843 CATTCAA-GAGCT-T-TATTACAAAAAGGGTATAG-ATGTCGAGGAATATGTGGAG-AAT 897
Query 841 AATCTCGACGTTGATGCCACTAACGAGTTGCATTTGTGGGTTCTAGAGGATGTTGAGAAA 900
||| || ||| |||||||||||| |||||| | ||||| |||||| |||||||||||||
Sbjct 898 AATGTCAACGCTGATGCCACTAATGAGTTGTGTGTGTGGATTCTAGCGGATGTTGAGAAA 957
Query 901 AAGAAATGGTCTAAATATGCCTACACTT 928
|| ||||||| ||| ||||||||||||
Sbjct 958 CAGGAATGGTCGAAACATGCCTACACTT 985
Score = 388 bits (210), Expect = 5e-107
Identities = 283/317 (89%), Gaps = 10/317 (3%)
Strand=Plus/Plus
Query 940 TGGTCTAAATATGCCTACACTTGGACCGATGATACA-TTCTTCCGTCGTCACCTTTCCAT 998
||||| ||| |||||||||||||||||||||| | | |||||||||||| | |||||
Sbjct 964 TGGTCGAAACATGCCTACACTTGGACCGATGA-AAAGTTCTTCCGTCGTTTGGTATCCAT 1022
Query 999 CGCTGGAGCCACTGCTTCAGTTGAAATAGTGTTTTCCATGCGTAAGTATACAT-CTAAAC 1057
|||||||| |||||||| | ||||||||||||||| ||||| |||| || || ||||||
Sbjct 1023 CGCTGGAGTGACTGCTTCGGGTGAAATAGTGTTTTCGATGCGCAAGTGTA-ATCCTAAAC 1081
Query 1058 AACCGTTTTATGTTTTTTACTTCAATCCCGAAAGGAACACTCTCCAACGTGTTGAAATCC 1117
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1082 AACCGTTTTATGTGTTTTACTTCAATCCCGAAAGGAACAGTCTCCAACGTGTTGAAATTC 1141
Query 1118 AAGGTTTTGGTGAAG-CGTTTAAGGAAA-CTTGTAG-CGTTCGCACCTTTGTAAACCACG 1174
||||||||||||||| || || | |||| ||||| | |||| ||||||||||||||||||
Sbjct 1142 AAGGTTTTGGTGAAGCCG-TT-ACGAAATCTTGT-GACGTTTGCACCTTTGTAAACCACG 1198
Query 1175 TAGAGGATCTTGATGTTAACGATTTAAAACAACTCAAGTCAGTCCATCCTCCATTGGTGG 1234
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1199 TAGAGGATCTCAATGTTTACGATTTAAAACAACTCAAGTCAGTCCATCCTCCATTGGTCG 1258
Query 1235 AGCCAGAATATTATGAT 1251
|||||||||||||||||
Sbjct 1259 AGCCAGAATATTATGAT 1275
> AT2G02890.1 | Symbols: | F-box family protein | chr2:843913-846616
REVERSE LENGTH=1596
Length=1596
Score = 431 bits (233), Expect = 9e-120
Identities = 401/480 (84%), Gaps = 20/480 (4%)
Strand=Plus/Plus
Query 102 GACCAGGTCCTCCGCTAAGCCGCGCCTCTTATTCGCCATCGCAGAAAACGGCGACGATAG 161
|||||||||||||||||||||| | |||||||||||||||||||| || | || ||
Sbjct 561 GACCAGGTCCTCCGCTAAGCCGAGTCTCTTATTCGCCATCGCAGACTAC-G-GA--AT-- 614
Query 162 CGCAGAAACTTGTGGTGTGTGGAGCTTCTTCTCATCGCCTCAGTTTGAGAATCCATATGA 221
| || || | | || | || |||||||||||||||||| |||||||| |||||||
Sbjct 615 TGAAG-AAGAT-TACAGTAT-GAAATTCTTCTCATCGCCTCAGCTTGAGAATACATATGA 671
Query 222 GAAATCGTCGTCGACTCTTGTAGCAGCTGCTGAATTTCATGTGAAGTTCTCTCCAGA-AA 280
|||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 672 GAAAACGTCGTCAACTCTTGTAGCAGCCGCTGAATTTCATGTGAAGTTCTCTCCAGACAA 731
Query 281 AT--TTGA-GGATCAATTAT-TATGGTGACATAAAATATTTTTCAATTGGCTACGCTTCT 336
| | | |||| | | | | || ||| || |||| |||||||||||||||| |||
Sbjct 732 GTCAAT-ACCGATCTA-TCTGTCTGAAGACCCAAGATATGTTTCAATTGGCTACGCCTCT 789
Query 337 GGCTTGATCTATATCTATGGTTGTCGATACCAAGCTAGACCTCTGATATGTAACCCCAAC 396
||||||||||||| |||| || |||||||| | ||||||||| |||||||||||||||
Sbjct 790 GGCTTGATCTATAACTATTGTGGTCGATACGTGGGTAGACCTCTAATATGTAACCCCAAC 849
Query 397 ACAGGACGGTATGCAATCTTACC-TAATCGTTATACTTATAGAAAAGCGTATAGCTTTTT 455
|||||||||||||| |||||||| || |||||||||||||||||| |||||||| |||||
Sbjct 850 ACAGGACGGTATGCGATCTTACCATA-TCGTTATACTTATAGAAAGGCGTATAGTTTTTT 908
Query 456 CGGGTTTGACCCCATTGACAAGCAATACAAGGCCTTGTCCAT-CCGTTATCCATCTGGTC 514
|||||||||||| ||||||||||||||||||||||||||| | || |||| | |||||
Sbjct 909 CGGGTTTGACCCGATTGACAAGCAATACAAGGCCTTGTCCCTTCC-TTATGTAGATGGTC 967
Query 515 CAGGACGTAACAAAATTCTTACATTTGGAGATGGAGATCTCACGTGGAGAAAGATCAAAT 574
| || |||| ||| ||||||||||||||| ||||||||| || |||||||| || ||||
Sbjct 968 CTGGTCGTAGTAAAGTTCTTACATTTGGAGCTGGAGATCTGACATGGAGAAATATTAAAT 1027
Score = 420 bits (227), Expect = 2e-116
Identities = 258/273 (95%), Gaps = 2/273 (1%)
Strand=Plus/Plus
Query 940 TGGTCTAAATATGCCTACACTTGGACCGATGATACATTCTTCCGTCGTCACCTTTCCATC 999
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1303 TGGTCTAAATATGCCTACACTTGGACCGATGATACATTCTTCCATCGTCACCTTTCCATT 1362
Query 1000 GCTGGAGCCACTGCTTCAGTTGAAATAGTGTTTTCCATGCGTAAGTATACATCTAAACAA 1059
||||||||||||||||| | ||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 1363 GCTGGAGCCACTGCTTCGGGTGAAATAGTGTTTTCGATGCGCAAGTACACATCTAAACAA 1422
Query 1060 CCGTTTTATGTTTTTTACTTCAATCCCGAAAGGAACACTCTCCAACGTGTTGAAATCCAA 1119
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1423 CCATTTTATGTTTTCTACTTCAATCCCGAAAGGAATACTCTCCAACGTGTTGAAATCCAA 1482
Query 1120 GGTTTTGGTGAAGCGTTTAAGGA-AACTTGTAGCGTTCGCACCTTTGTAAACCACGTAGA 1178
||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| ||||
Sbjct 1483 GGTTTTGGTGAAGCGTTTA-GGACAACTTGTAGTGTTCGCACCTTTGTAAACCACATAGA 1541
Query 1179 GGATCTTGATGTTAACGATTTAAAACAACTCAA 1211
|||||||||||||||||||||| ||||||||||
Sbjct 1542 GGATCTTGATGTTAACGATTTAGAACAACTCAA 1574
> AT2G16220.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:7030155-7031378 REVERSE LENGTH=1224
Length=1224
Score = 374 bits (202), Expect = 1e-102
Identities = 467/589 (79%), Gaps = 42/589 (7%)
Strand=Plus/Plus
Query 220 GAGAAATCGTCGTCGACTCTTGTAGCAGCTGCTGAATTTCATGTGAAGTTCTCTCCAGAA 279
||||| ||||||||||||||||||||| | |||||||||||| ||||||| |||||| ||
Sbjct 223 GAGAAGTCGTCGTCGACTCTTGTAGCAACCGCTGAATTTCATATGAAGTTATCTCCA-AA 281
Query 280 -AATTTGA-GGATCAATTATTATGGTGA-CATAAAATATTTTTCAATTGGCTACGCTTCT 336
||| | | | ||| || || || | | | || ||||||||||||||| ||||| |||
Sbjct 282 CAATCT-ACGAATCTATCATGATAAT-ACCCCAAGATATTTTTCAATTGGTTACGCCTCT 339
Query 337 GGCTTGATCTATATCTATGGTTG-TCGATACCAAGCTAGACCTCTGATATGTAACCCCAA 395
|||||||||||| | ||||| || ||||||| | |||| |||||||||||||||||||||
Sbjct 340 GGCTTGATCTATTTATATGG-TGATCGATACGAGGCTACACCTCTGATATGTAACCCCAA 398
Query 396 CACAGGACGGTATGCAATCTTACCTAA-TCGTTATACTTATAGAAAAGCGTATAGCTTTT 454
||||||| ||||| | ||||||||||| | | |||||||||||||| |||| ||||||||
Sbjct 399 CACAGGAAGGTATACGATCTTACCTAAGT-GCTATACTTATAGAAAGGCGTTTAGCTTTT 457
Query 455 TCGGGTTTGACCCCATTGACAAGCAATACAAGGCCTTGTCCATCCGT-TATCCATCTGGT 513
||||||||||||| ||||||||||| |||||||| |||||||| | ||||||||||||
Sbjct 458 TCGGGTTTGACCCAATTGACAAGCAGTACAAGGCATTGTCCATGA-TCTATCCATCTGGT 516
Query 514 CCAGGACGTAACAAAATTCTTACATTTGGAGATGGAGATCTCACGTGGAGAAAGATCAAA 573
|| || | | ||||||||||| ||||||||||| ||| | | |||| |||||| |||
Sbjct 517 CCTGGTCACAGTAAAATTCTTACTTTTGGAGATGGGGATATGAATTGGAAAAAGATAAAA 576
Query 574 TTTCCCTTAGGACGACCTGAAATTAAGAGTGATGGGATTTGCATCAATGGGGTTTTGTAT 633
| || | | || || ||| ||| | ||| | ||||| ||||||||||| |||||||||
Sbjct 577 TATCG-T--GTACTACATGATATTTACAGTCAAGGGATATGCATCAATGGTGTTTTGTAT 633
Query 634 TTCTTAGGTGAGA--T-AGGT-G--A-AG-GATCTTG-TG-A---T-T---A-TGTGATA 675
| ||||||||| | | || | | | | |||| || || | | | | |||| ||
Sbjct 634 TACTTAGGTGACACGTCAGATTGGGATAATGATCATGATGTAACGTCTGGTAATGTGTTA 693
Query 676 TTTTGCTTTGATGTTAGG-TCTGAGAAATT-CACGTGTATTTA-TGTAGGAAGGTTTTGT 732
||||||||||| ||| | || || || || ||| | |||| | ||| || || ||
Sbjct 694 GTTTGCTTTGAT-TTAAGATCCGA-AAGTTTCACCTTTATTGGCT-TAG-AATGTG--GT 747
Query 733 CGATTGATAAACTACAAGGGCAAATTAGCTGTGATTTATTGGGAGGATG 781
| |||||||||||| ||||||||||||||||| |||| |||||| ||||
Sbjct 748 CAATTGATAAACTATAAGGGCAAATTAGCTGTAATTTTTTGGGATGATG 796
> AT2G23160.1 | Symbols: | F-box family protein | chr2:9862470-9863744
FORWARD LENGTH=1275
Length=1275
Score = 215 bits (116), Expect = 1e-54
Identities = 250/311 (80%), Gaps = 23/311 (7%)
Strand=Plus/Plus
Query 946 AAATATGCCTACACTTGGACCGATGATACATTC-TTC--CGTCGTCACCTTTCCATCGCT 1002
|||||||||||||||||||||||||||| |||| ||| |||||| | ||||| | |||
Sbjct 925 AAATATGCCTACACTTGGACCGATGATATATTCTTTCGTCGTCGTGAGGTTTCCGTTGCT 984
Query 1003 -GGA-G-CCACTGCTTCAGTTGAAATAGTGTTTTCCATGCGTAAGTATACAT-CTAAACA 1058
| | | |||||| | ||| ||||| ||||| ||| || ||||||| | || |||
Sbjct 985 CCAACGACTGCTGCTTGGGGTGACATAGTCTTTTCGATGTGTGAGTATAC-TCCTGGACA 1043
Query 1059 ACCGTTTTATGTTTTTTACTTCAATCCCGAAAGGAACACTCTCCAACGTGTTGAAATCCA 1118
||| ||||||||||| |||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1044 ACCATTTTATGTTTTCTACTTCAATCCCGAAAAGAGCACTCTCCAACGTGTTGAAATCCA 1103
Query 1119 AGGTTTTGGTGAAG-CGTTTAAGGAAACTTGTAGCGTTCGCACCTTTGTAAACCACGTAG 1177
|||||||||||||| ||||| | | |||||| |||||||||| || ||||||
Sbjct 1104 AGGTTTTGGTGAAGGCGTTT--G-----T---AGCGTTTACACCTTTGTAGACGACGTAG 1153
Query 1178 AGGATCTTGATGTTAACGATTTAAAACA-ACTCAAGTCAGTCCA-TCCTCCATTGGTGGA 1235
| |||||| ||||||| ||||||||| | ||||||| || |||| | ||||||| | | |
Sbjct 1154 AAGATCTTAATGTTAAGGATTTAAAA-ATACTCAAGCCA-TCCAATGCTCCATTTGAGAA 1211
Query 1236 GCCAGAATATT 1246
| ||||| |||
Sbjct 1212 GACAGAAGATT 1222
> AT3G56890.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:21062990-21063717 REVERSE LENGTH=660
Length=660
Score = 75.0 bits (40), Expect = 2e-12
Identities = 57/65 (88%), Gaps = 2/65 (3%)
Strand=Plus/Plus
Query 865 GAGTTGCATTTGTGGGTTCTAGAGGATGTTGAGAAAAAGAAATGG-TCTAAATATGCCTA 923
|||||| |||||||||||||||||||||||||||| || ||||| || || |||| |||
Sbjct 262 GAGTTGTGTTTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGGTC-AAGTATGTCTA 320
Query 924 CACTT 928
|||||
Sbjct 321 CACTT 325
> AT1G47300.1 | Symbols: | F-box family protein | chr1:17339561-17340972
REVERSE LENGTH=921
Length=921
Score = 63.9 bits (34), Expect = 4e-09
Identities = 38/40 (95%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 1092 GAACACTCTCCAACGTGTTGAAATCCAAGGTTTTGGTGAA 1131
||||||| |||||||||||||||||||||||||||| |||
Sbjct 585 GAACACTATCCAACGTGTTGAAATCCAAGGTTTTGGAGAA 624
> AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-11092899
FORWARD LENGTH=1068
Length=1068
Score = 56.5 bits (30), Expect = 6e-07
Identities = 37/40 (93%), Gaps = 2/40 (5%)
Strand=Plus/Plus
Query 678 TTGCTTTGATGTTAGGTCTGAGAAATTCACGTGTATTTAT 717
||||||||||||||||||||||||||||| || | |||||
Sbjct 462 TTGCTTTGATGTTAGGTCTGAGAAATTCAAGT-T-TTTAT 499
> AT1G30935.1 | Symbols: | pseudogene, F-box protein family, contains
F-box domain Pfam:PF00646 | chr1:11017436-11018990 REVERSE
LENGTH=1555
Length=1555
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 678 TTGCTTTGATGTTAGGTCTGAGAAATTCA 706
|||||||||||||||||||||||||||||
Sbjct 684 TTGCTTTGATGTTAGGTCTGAGAAATTCA 712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63302887245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5