BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346793
Length=693
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02990.1 | Symbols: RNS1, ATRNS1 | ribonuclease 1 | chr2:873... 1107 0.0
> AT2G02990.1 | Symbols: RNS1, ATRNS1 | ribonuclease 1 | chr2:873506-874811
FORWARD LENGTH=1045
Length=1045
Score = 1107 bits (599), Expect = 0.0
Identities = 661/692 (96%), Gaps = 0/692 (0%)
Strand=Plus/Plus
Query 1 ATGAAGATTCTTCTAGCATCATTGTGTGTGATCAGtcttctcgtaatcttgccttctgtc 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 209 ATGAAGATTCTTCTAGCATCATTGTGTTTGATCAGTCTTCTCGTAATCTTGCCTTCTGTC 268
Query 61 ttctctgcttcttcttcctctgaagatttcgatttcttctACTTTGTCCAACAATGGCCA 120
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 269 TTCTCTGCTTCTTCTTCCTCTGAAGATTTTGATTTCTTCTACTTCGTCCAACAATGGCCA 328
Query 121 GGATCATACTGTGACACACAGAAGAAGTGTTGTTATCCAACTACAGGCAAACCAGCTGCT 180
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 329 GGATCATACTGTGACACACAGAAGAAGTGTTGTTATCCAAATTCAGGCAAACCAGCTGCT 388
Query 181 GATTTTGGAATTCATGGTCTCTGGCCTAATTACAAAGATGGCACTTATCCATCTAACTGT 240
|||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 389 GATTTTGGCATTCATGGTCTTTGGCCTAACTACAAAGATGGAACTTATCCATCTAACTGT 448
Query 241 GACGAGACTAAACCATTCGATAAATCAACGATATCAGATCTTATCACTTCAATGAAGAAG 300
|| | ||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 449 GATGCCTCTAAACCATTCGATAGCTCAACGATATCAGATCTTCTCACTTCAATGAAGAAG 508
Query 301 AGCTGGCCAACACTGGCTTGCCCGAGCGGTTCAGGTGAAGCGTTTTGGGAACATGAATGG 360
||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 509 AGCTGGCCAACACTGGCTTGCCCAAGCGGTTCAGGTGAAGCGTTTTGGGAGCACGAATGG 568
Query 361 GAGAAGCATGGTACTTGCTCCGAATCGGTTATTGATCAACATGAGTATTTCCAAACCGCT 420
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 569 GAGAAGCATGGTACTTGCTCTGAATCGGTTATCGATCAACATGAATATTTCCAAACCGCT 628
Query 421 CTTAACCTTAAACAGAAAACCAATCTCCTTGGAGCTTTAACCAGAGCCGGGATTAATCCG 480
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 629 CTTAACCTTAAACAGAAAACCAATCTCCTTGGAGCTCTAACCAAAGCCGGGATTAATCCG 688
Query 481 GATGGAAAATCATATTCTTTGGAGAGTATAAGAGATTCGATAAAAGAGTCAATTGGTTTC 540
||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 689 GATGGAAAATCTTACTCTTTGGAGAGCATAAGAGATTCGATAAAAGAGTCAATTGGTTTC 748
Query 541 ACTCCTTGGGTTGAGTGTAACAGAGATGGTTCTGGTAATAGCCAATTGTATCAAGTCTAT 600
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 749 ACTCCTTGGGTTGAGTGTAACAGAGATGGTTCTGGTAATAGCCAATTGTACCAAGTCTAT 808
Query 601 CTTTGTGTTGACCGGTCTGGTTCCGGTTTAATTGAATGTCCGGTTTTCCCTCATGGGAAA 660
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 809 CTTTGTGTTGACCGGTCTGGTTCCGGTTTAATCGAATGTCCGGTTTTCCCACATGGGAAA 868
Query 661 TGTGGAGCCGAGATCGAATTCCCTTCTTTTTA 692
|||||||| |||||||||||||||||||||||
Sbjct 869 TGTGGAGCTGAGATCGAATTCCCTTCTTTTTA 900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33556410196
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5