BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346838
Length=2085
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70770.1 | Symbols: | Protein of unknown function DUF2359, ... 431 1e-119
> AT1G70770.1 | Symbols: | Protein of unknown function DUF2359,
transmembrane | chr1:26688230-26691277 REVERSE LENGTH=2317
Length=2317
Score = 431 bits (233), Expect = 1e-119
Identities = 391/466 (84%), Gaps = 16/466 (3%)
Strand=Plus/Plus
Query 1577 CTCTTACCGGTTCACCAGGAAGCAAGGCAATGAAACAAGTTACTCAAAAGATATTCAC-T 1635
||||| | ||| |||||||||||||||| ||||||||||| || ||| |||||||||| |
Sbjct 1333 CTCTTGCTGGTGCACCAGGAAGCAAGGCGATGAAACAAGTCACACAACAGATATTCACTT 1392
Query 1636 TTGTCTTTGAAATTAGCTAAAGAAGTTACAGGAAATCCTGTTTTAGCCAAGGAAGCTACA 1695
||| || ||||||||||| | || | |||||||||||||||||||||||||||||||
Sbjct 1393 TTG-CTCTGAAATTAGCT---GGAG--A-AGGAAATCCTGTTTTAGCCAAGGAAGCTACA 1445
Query 1696 TCAATCGCTATCTGGTCTCTGACCGAAAACGTTAATTGGTGGAAGCTCTGGGAGAATCTC 1755
|||| |||||||||||| ||||| ||||| || |||| || |||| |||||| ||||||
Sbjct 1446 GCAATTGCTATCTGGTCTGTGACCCAAAACTTTGATTGCTGCAAGCACTGGGACAATCTC 1505
Query 1756 TATAAGGAGAATCTAGAAGCTAGTGTTGCTCTTCTTAAAAAGCTTGTAGACGAATGGAAG 1815
|| ||||||||||| ||||||||||||||| |||||||||||||||| || ||||||||
Sbjct 1506 TACAAGGAGAATCTGGAAGCTAGTGTTGCTGTTCTTAAAAAGCTTGTTGAAGAATGGAAA 1565
Query 1816 G-GTCATTCTCTCAAATTATTATCACCACCGAGTGATACGCTCACTCTCAGTCAAACTAT 1874
| | ||||| ||||| ||| |||| |||||| |||| | |||||||||| | ||||||
Sbjct 1566 GAG-CATTCGGTCAAACTATCATCATCACCGAATGATGCTCTCACTCTCAACCGAACTAT 1624
Query 1875 -AAAGAGCTTCATGCTAAAGAACAAAAAAGCCATCACTGAGAGAGAAGCCAAAGCTTCTC 1933
||| ||||||| |||||||||| | | | |||||||||| ||| |||||| |||||||
Sbjct 1625 GAAA-AGCTTCAGGCTAAAGAACGAGGAGGTCATCACTGAGGGAGGAGCCAATGCTTCTC 1683
Query 1934 TTTACAAAGAAGCTGACGAGTCCTGCAAAGTGATATCTGGAAGACTC-CCTCGTGGAAGT 1992
||||||||||||||||| |||| |||||| ||| || || |||||| || |||||||||
Sbjct 1684 TTTACAAAGAAGCTGACAAGTCTTGCAAAACGATCTCGGGGAGACTCTCC-CGTGGAAGT 1742
Query 1993 ATCAGCCTCAAAGGTACAACCATTACTGTT-GTGGTTCTAGTTGCT 2037
| |||||||||| ||| |||||||| || ||| |||||| ||||
Sbjct 1743 GGCTGCCTCAAAGGAACAGCCATTACT-TTAGTGTTTCTAGCTGCT 1787
Score = 252 bits (136), Expect = 1e-65
Identities = 197/225 (88%), Gaps = 10/225 (4%)
Strand=Plus/Plus
Query 1348 CAACAGATATTCAC-TTTGTCTTTAAAATTAGCTGGAGAAGGAAATCCTGTTTTACCCCA 1406
|||||||||||||| |||| || | |||||||||||||||||||||||||||||| || |
Sbjct 1377 CAACAGATATTCACTTTTG-CTCTGAAATTAGCTGGAGAAGGAAATCCTGTTTTAGCCAA 1435
Query 1407 GCAAGCTACAGCAATTGCTATCTGGTCTGTGACC-AAAATCGTTGATTGCTGCAAGCACT 1465
| |||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||
Sbjct 1436 GGAAGCTACAGCAATTGCTATCTGGTCTGTGACCCAAAA-CTTTGATTGCTGCAAGCACT 1494
Query 1466 GGGACAATCTCTATGAGGAGAATCTAAAAGCTTGTGTTGATCTTCTTAAAAAGCTTGTAG 1525
||||||||||||| |||||||||| ||||| |||||| | |||||||||||||||| |
Sbjct 1495 GGGACAATCTCTACAAGGAGAATCTGGAAGCTAGTGTTGCTGTTCTTAAAAAGCTTGTTG 1554
Query 1526 A-GAAGTGTGAA-GCTCATTTCC-TCAAACTATCACCATCACCGA 1567
| ||| || ||| | |||| | ||||||||||| |||||||||
Sbjct 1555 AAGAA-TG-GAAAGAGCATT-CGGTCAAACTATCATCATCACCGA 1596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103362922155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5