BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346899
Length=474
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04041.1 | Symbols: | Protein of unknown function (DUF784) ... 377 4e-104
> AT2G04041.1 | Symbols: | Protein of unknown function (DUF784)
| chr2:1308089-1308544 REVERSE LENGTH=456
Length=456
Score = 377 bits (204), Expect = 4e-104
Identities = 380/462 (82%), Gaps = 24/462 (5%)
Strand=Plus/Plus
Query 1 ATGGCAAAGTCTTTTCTCATGGTAATGCTCATATCCATAGTAATGTTTTCCATGGCTCGT 60
|||||||||||||||||||||||||||||| |||||| |||||||||| ||||||| ||
Sbjct 1 ATGGCAAAGTCTTTTCTCATGGTAATGCTCGCATCCATGGTAATGTTTTACATGGCTTGT 60
Query 61 CCAATTTATTCCCAAAAAATTGATCCATATTCACAAGGGATACCAAAAGAAGCAGACATA 120
|||||||| ||||| |||| || |||| || ||| ||| | || || ||
Sbjct 61 CCAATTTACTCCCAGAAAA---AT--ATAT-CAGAAG--ATAT-A---GA--CA----TA 102
Query 121 TCTCCAACTCCATTGGAAGTAGCTGATTCACCTACAACGGAATCTGAGATAGAGCTTGCT 180
|||||||| || |||||| ||||||| ||| ||||| || | ||||||||||||||||
Sbjct 103 GCTCCAACTTCAGTGGAAGGGGCTGATTTACCCACAACAGAGTATGAGATAGAGCTTGCT 162
Query 181 CACCATTTGCATAAAGACTATATTCTTGCTTGCCCTAAAAAGCCGAGTCCCAAATGCGAA 240
|||| ||| ||| |||| |||||||| ||||||||||||||||||||| ||||||| ||
Sbjct 163 CACCGTTTACATGAAGATTATATTCTGGCTTGCCCTAAAAAGCCGAGTTCCAAATGTGAT 222
Query 241 GATGAGATTTTCAACAACATGTTGGATGAGATGACGCCAGTGACA-GATGAATGTTGTCG 299
|||||||||||||| |||||| |||||| || ||| ||||||||| | ||||||||||||
Sbjct 223 GATGAGATTTTCAATAACATGATGGATGGGACGACACCAGTGACAAG-TGAATGTTGTCG 281
Query 300 TGATGTATTGAATACTGGCAAAGATTGCCATCTCGCAATGGTTAAAATCATATTCTCTAC 359
|||| ||||||| ||||| |||||||| ||||| ||| |||||||||| ||||||| ||
Sbjct 282 TGATATATTGAAGACTGGTAAAGATTGTCATCTTGCATTGGTTAAAATTGTATTCTCCAC 341
Query 360 ATATGACTACAAAAATATTGCATCTA-AGGCTATTCCAAAGAGTAAACAGACATGGAACG 418
||| || |||| || ||||| | || | |||||||| ||||||||||||||||| |
Sbjct 342 GGATGGGTATAAAAGTAAAGCATCCAGAG-CAATTCCAAAAAGTAAACAGACATGGAATG 400
Query 419 ATTGTATCCGTAGAGTTGGCAAC-ACGATTGGTGCTCCGGTC 459
||||| ||||||||||||| | | ||||||||| ||||||
Sbjct 401 ATTGTGTCCGTAGAGTTGGGATGGA-GATTGGTGCCCCGGTC 441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22555132003
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5