BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg346954

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25940.1 | Symbols:  | TFIIB zinc-binding protein | chr3:949...   499    6e-141


> AT3G25940.1 | Symbols:  | TFIIB zinc-binding protein | chr3:9494697-9496092 
FORWARD LENGTH=590
Length=590

 Score =  499 bits (270),  Expect = 6e-141
 Identities = 333/363 (92%), Gaps = 6/363 (2%)
 Strand=Plus/Plus

Query  1    ATGGAGAAATCTCGAGAAAGTG-GTTTCTTGTTCTGTAACTGGTGTGGGACGATGCTTGT  59
            |||||||||||| ||||||| | | |||||||||||||| | ||||||||| ||||||||
Sbjct  81   ATGGAGAAATCTAGAGAAAGCGAG-TTCTTGTTCTGTAATTTGTGTGGGACTATGCTTGT  139

Query  60   CTTGAAATCAACTAAGTATGCAGAGTGTCCATTA-TGTAAAACAACGA-GAAATGCAAAA  117
            |||||||||||| ||||||||||| ||||||  | || |||||||| | | |||||||||
Sbjct  140  CTTGAAATCAACCAAGTATGCAGAATGTCCA-CATTGCAAAACAAC-ACGGAATGCAAAA  197

Query  118  GAGATTATCAACAAGGAAATAGCTTACACAGTTACTGCTGAGGATATCAGAAGAGAATTA  177
            || || ||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct  198  GATATCATCGACAAGGAAATAGCTTACACAGTTTCTGCTGAGGATATCAGAAGAGAACTA  257

Query  178  GGAATATCATTGTTTGGTGAAAAAACGCAGGAAGAGGCTGAGCTACCAAAGATCAAAAAG  237
            ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct  258  GGAATATCATTGTTTGGTGAAAAAACGCAGGCAGAAGCTGAGCTACCAAAGATCAAAAAG  317

Query  238  GCGTGCGAGAAATGCCAGCACCCGGAGCTTGTATATACGACCAGACAGACGAGATCAGCG  297
            || ||||||||||||||||| || ||||||||||| || |||||||||||||||||||| 
Sbjct  318  GCATGCGAGAAATGCCAGCATCCTGAGCTTGTATACACAACCAGACAGACGAGATCAGCT  377

Query  298  GACGAAGGACAGACAACATATTACACTTGCCCCAATTGTGCTCATAGATTCACAGAAGGT  357
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  378  GATGAAGGACAGACAACATATTACACTTGCCCCAATTGTGCTCATAGATTCACAGAAGGT  437

Query  358  TGA  360
            |||
Sbjct  438  TGA  440



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16889963664


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5