BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg346954 Length=360 Score E Sequences producing significant alignments: (Bits) Value AT3G25940.1 | Symbols: | TFIIB zinc-binding protein | chr3:949... 499 6e-141 > AT3G25940.1 | Symbols: | TFIIB zinc-binding protein | chr3:9494697-9496092 FORWARD LENGTH=590 Length=590 Score = 499 bits (270), Expect = 6e-141 Identities = 333/363 (92%), Gaps = 6/363 (2%) Strand=Plus/Plus Query 1 ATGGAGAAATCTCGAGAAAGTG-GTTTCTTGTTCTGTAACTGGTGTGGGACGATGCTTGT 59 |||||||||||| ||||||| | | |||||||||||||| | ||||||||| |||||||| Sbjct 81 ATGGAGAAATCTAGAGAAAGCGAG-TTCTTGTTCTGTAATTTGTGTGGGACTATGCTTGT 139 Query 60 CTTGAAATCAACTAAGTATGCAGAGTGTCCATTA-TGTAAAACAACGA-GAAATGCAAAA 117 |||||||||||| ||||||||||| |||||| | || |||||||| | | ||||||||| Sbjct 140 CTTGAAATCAACCAAGTATGCAGAATGTCCA-CATTGCAAAACAAC-ACGGAATGCAAAA 197 Query 118 GAGATTATCAACAAGGAAATAGCTTACACAGTTACTGCTGAGGATATCAGAAGAGAATTA 177 || || ||| ||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 198 GATATCATCGACAAGGAAATAGCTTACACAGTTTCTGCTGAGGATATCAGAAGAGAACTA 257 Query 178 GGAATATCATTGTTTGGTGAAAAAACGCAGGAAGAGGCTGAGCTACCAAAGATCAAAAAG 237 ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 258 GGAATATCATTGTTTGGTGAAAAAACGCAGGCAGAAGCTGAGCTACCAAAGATCAAAAAG 317 Query 238 GCGTGCGAGAAATGCCAGCACCCGGAGCTTGTATATACGACCAGACAGACGAGATCAGCG 297 || ||||||||||||||||| || ||||||||||| || |||||||||||||||||||| Sbjct 318 GCATGCGAGAAATGCCAGCATCCTGAGCTTGTATACACAACCAGACAGACGAGATCAGCT 377 Query 298 GACGAAGGACAGACAACATATTACACTTGCCCCAATTGTGCTCATAGATTCACAGAAGGT 357 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 378 GATGAAGGACAGACAACATATTACACTTGCCCCAATTGTGCTCATAGATTCACAGAAGGT 437 Query 358 TGA 360 ||| Sbjct 438 TGA 440 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16889963664 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5