BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg346986
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26280.1 | Symbols: CYP71B4 | cytochrome P450, family 71, su... 316 3e-85
AT3G26230.1 | Symbols: CYP71B24 | cytochrome P450, family 71, s... 285 7e-76
AT3G26220.1 | Symbols: CYP71B3 | cytochrome P450, family 71, su... 263 3e-69
AT1G13110.1 | Symbols: CYP71B7 | cytochrome P450, family 71 sub... 132 1e-29
> AT3G26280.1 | Symbols: CYP71B4 | cytochrome P450, family 71,
subfamily B, polypeptide 4 | chr3:9630200-9632009 REVERSE LENGTH=1712
Length=1712
Score = 316 bits (171), Expect = 3e-85
Identities = 233/262 (89%), Gaps = 8/262 (3%)
Strand=Plus/Plus
Query 891 AGAGTTTATCCCGGAGAGGTTTATCGA-TGATCCTATGGATTAC-AGAGGACAGAGTTTT 948
|||||||| ||||||||||||||| || || |||| |||||||| || ||||| || |||
Sbjct 1284 AGAGTTTAACCCGGAGAGGTTTATTGATTG-TCCTGTGGATTACAAG-GGACATAGCTTT 1341
Query 949 GAGATGTTACCATTTGGTTCTGGCCGGAGAATGTGTCCAGGAATGAGTTTTGG-GATTGC 1007
||| ||||||||||||||||||| |||||||| ||||||||||| || | ||| ||| ||
Sbjct 1342 GAGTTGTTACCATTTGGTTCTGGTCGGAGAATTTGTCCAGGAAT-AGCTATGGCGATCGC 1400
Query 1008 GACCATTGAATTAGGACTCTTGAACTTGCTTTACTTTTTTGATTGGGAAT-TGCCTGAGG 1066
||||||||||| || |||||||| ||||| ||||| ||||||| ||||| ||||||||
Sbjct 1401 AACCATTGAATTGGGGCTCTTGAATTTGCTCTACTTCTTTGATT-GGAATATGCCTGAGA 1459
Query 1067 AGAAGAAAGATATGGACATGGAAGAAGCTGGTGATGTCATTGTTGTTAAGAAAGTTCCTC 1126
||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||
Sbjct 1460 AGAAGAAAGATATGGACATGGAAGAAGCTGGTGATCTCACTGTTGATAAGAAAGTTCCTC 1519
Query 1127 TTGAGCTTCTGCCAGTTATTCG 1148
||||||||||||||||||||||
Sbjct 1520 TTGAGCTTCTGCCAGTTATTCG 1541
> AT3G26230.1 | Symbols: CYP71B24 | cytochrome P450, family 71,
subfamily B, polypeptide 24 | chr3:9598005-9599959 REVERSE
LENGTH=1759
Length=1759
Score = 285 bits (154), Expect = 7e-76
Identities = 632/851 (74%), Gaps = 79/851 (9%)
Strand=Plus/Plus
Query 67 AAGAAGATCAAAGACTCAAGACAG-AATCTTCCTCCGAGCCCACCAAAGCTTCC-GTTCA 124
||||| ||||||||||| | || | ||||||||||||||||||| ||||| || ||| |
Sbjct 116 AAGAAAATCAAAGACTCGA-ACCGAAATCTTCCTCCGAGCCCACTGAAGCTACCGGTT-A 173
Query 125 TCGGAAATCTACACCAAATTCGAAGACTGCTTCACAGATGTCTTCACGATCTTTCTAAG- 183
||||||| ||| |||| ||||| || || |||||| ||||||||||||||| || |||
Sbjct 174 TCGGAAACCTATACCAGCTTCGAGGATTGTTTCACAAATGTCTTCACGATCTCTCCAAGA 233
Query 184 -A-A--G----GT-TTG--TC-CCAGTTGT-GGTAATCTC-ATA------T--TCTCATC 221
| | | || ||| || || | | | ||| |||| ||| | |||||||
Sbjct 234 AACACGGACCCGTGTTGCTTCTCC-G-TCTAGGTTTTCTCGATATGGTTGTGATCTCATC 291
Query 222 GAGTGAAGCAGCTGAAGAAGTTCTTAAAACCCATGACCTAGAGTGTTGTA-CACGACCTA 280
|| |||||||||||||||| ||||||| |||||||| |||||||||| || ||||||
Sbjct 292 GACCGAAGCAGCTGAAGAAGCTCTTAAAGTACATGACCTTGAGTGTTGTACCA-GACCTA 350
Query 281 -AGGCT--C-TCGGGATGCAGACATTTTCGCGTAAGGGTAAAGACATTGGTTTGGCGTCA 336
| || | || || || | | | | |||| | ||| |||| || || || || ||
Sbjct 351 TA-ACTAACGTC-ACAT-CA-AAACTCTGGCGTGACGGTCAAGATATCGGCTTAGCCCCA 406
Query 337 TACGGTGAGGAC-TGGATAGAGCTGCGCAAGC-TTGCTATACTCGAGTTCTTCAGCGCGA 394
|| ||||| | | | || |||| |||| |||| || || | ||| |||| |||||| |||
Sbjct 407 TATGGTGA-GTCTTTGAGAGAGTTGCGGAAGCTTTCCT-TTCTCAAGTTTTTCAGCACGA 464
Query 395 AAAAGGTCCGATCTTTTAGGTATATCAGAGAGGAAGAAAATGACTTGATGATCAAGAAAC 454
|||||| |||||||||||||| |||||||||||||| ||||| |||||| |||||||||
Sbjct 465 CAAAGGTTCGATCTTTTAGGTACATCAGAGAGGAAGAGAATGATTTGATGGTCAAGAAAC 524
Query 455 TGACA-GTATCAGCTTTGAAGCAAT-ATCCAGTGGATTTGAGCAAAACCCTTTTCTCTTT 512
||| | | | | ||| ||||| ||| ||| || ||||||||| |||| |||||| | |
Sbjct 525 TGA-AGGAAGCGGCTCTGAAGAAATCTTCC-GTAGATTTGAGCCAAACACTTTTCGGTCT 582
Query 513 AGCTGCGAGTATCATATTCAGATCCGCCTTTGGACAGAATTTCG-CGGAAACCAAACATA 571
|| || ||||||||||||||||||||||||||||||| ||||| || | ||| |||
Sbjct 583 AGTTGGGAGTATCATATTCAGATCCGCCTTTGGACAGCGTTTCGACG-AGGGCAATCATG 641
Query 572 TTAATAAGGAAAAGATCGAAGAATTGATATTTGAAGCTCTAATAAA-TATGT-CTTTCA- 628
| ||| |||||||||||||| | || ||||| | || | ||| | | | |||
Sbjct 642 TGAATGCTGAAAAGATCGAAGACCTCATGTTTGAGG-TCCAG-AAACTCGGAGCACTCAG 699
Query 629 -AATTCTCTGATCTCTTCCCTACTGCTGGTCTTGG-ATGGTTTATGGACTTTGTTTTAGG 686
|||||| ||||| |||||| | |||| |||| ||||||| | |||||||| | ||
Sbjct 700 TAATTCT--GATCTTTTCCCTG--G-TGGT-TTGGGATGGTTTGTTGACTTTGTGTCGGG 753
Query 687 AGA-ACACAAGAGACTTCATAACATT-TTCGCCGAGGTTGATACTTTTG-TCAAGAA-AG 742
| | | | |||| |||||| || | | |||| ||||||||||||| | | | || | |
Sbjct 754 ACATA-ATAAGAAACTTCACAA-AGTCTTCGTCGAGGTTGATACTCT-GCTGAATCATAT 810
Query 743 TGGCTGATGATCATTTGAATATCAAGCATGGA-GTAACAACTCAAGATCGTCCTGATATT 801
| ||||||||| ||||| | | || || | || |||||| ||||||||||||||
Sbjct 811 TAT-TGATGATCACTTGAAAAACTCT-ATAGAAGAAATAACTCATGATCGTCCTGATATC 868
Query 802 GTTGA-TGTGATGTTGGAAATGATAC-ATAAACAAGAAGAAGATGATTCTTCTTTCAGGC 859
| || | | | | || ||||||| | ||||||||| ||| ||||||| | || ||
Sbjct 869 ATCGACTC-GCTCCTAGATATGATACGA-AAACAAGAACAAGGGGATTCTT-T--CAAGC 923
Query 860 TCACAATTGAT 870
|||| ||||||
Sbjct 924 TCACCATTGAT 934
> AT3G26220.1 | Symbols: CYP71B3 | cytochrome P450, family 71,
subfamily B, polypeptide 3 | chr3:9596077-9597833 REVERSE LENGTH=1642
Length=1642
Score = 263 bits (142), Expect = 3e-69
Identities = 220/257 (86%), Gaps = 8/257 (3%)
Strand=Plus/Plus
Query 895 TTTATCCCGGAGAGGTTTATCGA-TGATCCTATGGATTACAGAGGACAGAGTTTTGAGAT 953
|||| ||||||||| |||||||| || |||||||||||||| |||| | |||||||||||
Sbjct 1251 TTTAACCCGGAGAGATTTATCGATTG-TCCTATGGATTACAAAGGAAATAGTTTTGAGAT 1309
Query 954 GTTACCATTTGGTTCTGGCCGGA-GAATGTGTCCAGGAATGAG-TTTTGGGATTGCGACC 1011
|||||||||||||||||| |||| || | |||||||| || || |||||| || ||||||
Sbjct 1310 GTTACCATTTGGTTCTGGTCGGAAGA-TATGTCCAGGGAT-AGCTTTTGGAATAGCGACC 1367
Query 1012 ATTGAATTAGGACTCTTGAACTTGCTTTACTTTTTTGATTGG-GAATTGCCTGAGGAGAA 1070
||||| | ||||| |||||||||||||||| ||||||||| || ||| |||||||| |
Sbjct 1368 GTTGAACTGGGACTATTGAACTTGCTTTACTACTTTGATTGGAGA-TTGGCTGAGGAGGA 1426
Query 1071 GAAAGATATGGACATGGAAGAAGCTGGTGATGTCATTGTTGTTAAGAAAGTTCCTCTTGA 1130
|||||||| ||||||||||| |||||||||| || ||||||||||||||||||||||
Sbjct 1427 TAAAGATATTGACATGGAAGAGGCTGGTGATGCCACAATTGTTAAGAAAGTTCCTCTTGA 1486
Query 1131 GCTTCTGCCAGTTATTC 1147
||| | ||| ||||||
Sbjct 1487 ACTTGTCCCAATTATTC 1503
> AT1G13110.1 | Symbols: CYP71B7 | cytochrome P450, family 71 subfamily
B, polypeptide 7 | chr1:4467220-4469033 FORWARD LENGTH=1743
Length=1743
Score = 132 bits (71), Expect = 1e-29
Identities = 150/187 (80%), Gaps = 10/187 (5%)
Strand=Plus/Plus
Query 892 GAGTTTATCCCGGAGAGGTTTATCGA-TGATCCTATGGATTACAGAGGAC-AGAGTTTTG 949
||||||| ||| || |||||| | || | ||| || ||||||||||||| | | ||||
Sbjct 1298 GAGTTTAACCCTGACAGGTTTCTTGACAGCTCC-ATAGATTACAGAGGACTA-AACTTTG 1355
Query 950 AGATGTTACCATTTGGTTCTGGCCGGAGAATGTGTCCAGGAATGA-GTTTTGGGATTG-C 1007
|| |||||||||||||||||||||||||||| ||||| || |||| | | |||| | |
Sbjct 1356 AGCTGTTACCATTTGGTTCTGGCCGGAGAATCTGTCCCGGGATGACGCT--GGGAATCAC 1413
Query 1008 GACCATTGAATTAGGACTCTTGAACTTGCTTTACTTTTTTGATTGGGAATTGCCTG-AGG 1066
||| | ||||| ||||| ||||| ||||||||||| || ||||||| | |||||| |||
Sbjct 1414 CACCGTGGAATTGGGACTGTTGAATTTGCTTTACTTCTTCGATTGGGTAGTGCCTGTAGG 1473
Query 1067 AGAAGAA 1073
||||||
Sbjct 1474 -GAAGAA 1479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62549879070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5