BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg347008

Length=897
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G08710.2 | Symbols:  | F-box family protein | chr1:2771633-2...   296    2e-79


> AT1G08710.2 | Symbols:  | F-box family protein | chr1:2771633-2773047 
FORWARD LENGTH=1011
Length=1011

 Score =  296 bits (160),  Expect = 2e-79
 Identities = 185/197 (94%), Gaps = 2/197 (1%)
 Strand=Plus/Plus

Query  17   GGTTTGAGAGGGAGAAGGAGAGGAAAGTAGCTGCATATAGAAGAGCTTTACTCAGGAAGG  76
            |||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||
Sbjct  323  GGTTTGAGAGGGAGAAGGAGAGGAAATTAGCTGCCCATAGAAGAGCTTTACTCAGGAAGG  382

Query  77   AGAGTGAAATTTATGAATGGGGCCGGAGGATTCGTGAATTGGAGGCTCGATTGTCGGACG  136
            |||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct  383  AGAGTGAAATTTCTGAATGGGGCCGGAGGATTCGTGAATTGGAGGCACGATTGTCCGACG  442

Query  137  AGGCTGAGAGATTACATTCTTCTTCTCTGCAATTTTCAGATTTGCTCAAAGTGAGGCAAG  196
            ||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct  443  AGGCTGAGAGACTACAGTCTTCTTCTCTGCAATTTTCAGATTTGCTGAAAGTGAGGCAAG  502

Query  197  CATC-GATGGCTTTGAA  212
            |||| | | ||||||||
Sbjct  503  CATCAG-TAGCTTTGAA  518



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 43804176184


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5