BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg347015

Length=828
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G26540.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like s...   472    3e-132
  AT3G26550.1 | Symbols:  | Cysteine/Histidine-rich C1 domain fam...   355    3e-97 
  AT3G26560.1 | Symbols:  | ATP-dependent RNA helicase, putative ...   289    4e-77 


> AT3G26540.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like 
superfamily protein | chr3:9744542-9746644 REVERSE LENGTH=2103
Length=2103

 Score =  472 bits (255),  Expect = 3e-132
 Identities = 291/309 (94%), Gaps = 0/309 (0%)
 Strand=Plus/Plus

Query  236  GTCAGATTCTTGAGCACCTTGAAGGCGGTAATGTCTCAAAAGCCGTCTCTGCTCTCTTTG  295
            |||||||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||
Sbjct  101  GTCAGATTCTTGAGCATCTCGAAGGCGGTAATGTCTCGAAAGCCGTCTCTGTTCTCTTTG  160

Query  296  CTTCTCCAGAGCCAGTTGGGTATTGGCTATACGAGCGTCTTTTCCGTCCTTGTTCCTCGA  355
            ||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||
Sbjct  161  CTTCTCCAGAGCCAGTTAGTTATTGGCTATACGAGCGTCTTTTCCGTTCTTGTTCCTCGA  220

Query  356  AATCTCTTCTTGTGCAAGCCCGTAAAGTCCAATCCCATTTAGTAACTTTCTCTCCGTTGC  415
            || ||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct  221  AAGCTCTTGTTGTGCAAGCCCGTAAAGTCCAATCTCACTTAGTAACTTTCTCTCCGTTGC  280

Query  416  CTCCGAGTTTCCTCTTGAACAGAGCTATTGAGGCTTATGGGAAATGTGGGTGTGTTGATG  475
            |||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct  281  CTCCGATTTTCCTCTTGAACAGAGCCATTGAGGCTTATGGTAAATGTGGGTGTGTTGATG  340

Query  476  ATGCACGGGAACTGTTCGAGCAAATGCCTGAACGAGATGGTGGTTCTTGGAACGCTGTGA  535
            ||||||| || ||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct  341  ATGCACGAGAGCTGTTCGAGGAAATGCCTGAACGAGATGGTGGGTCTTGGAACGCTGTGA  400

Query  536  TTACTGCTT  544
            |||||||||
Sbjct  401  TTACTGCTT  409


 Score =  124 bits (67),  Expect = 1e-27
 Identities = 71/73 (97%), Gaps = 0/73 (0%)
 Strand=Plus/Plus

Query  569  AGCTGCATTGTGCTGTGGTGAAGTATGGGTATTCGGGTAATGTAGATTTGGAGACTTCCA  628
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct  548  AGCTGCATTGTGCTGTGGTGAAGTATGGGTATTCGGGGAATGTAGATTTGGAGACTTCGA  607

Query  629  TTGTTGATGTTTA  641
            |||||||||||||
Sbjct  608  TTGTTGATGTTTA  620


> AT3G26550.1 | Symbols:  | Cysteine/Histidine-rich C1 domain family 
protein | chr3:9746895-9749046 REVERSE LENGTH=2152
Length=2152

 Score =  355 bits (192),  Expect = 3e-97
 Identities = 218/231 (94%), Gaps = 0/231 (0%)
 Strand=Plus/Plus

Query  1     ATGTACATGAAACCTGGTAATAGTGTACAAGATTACATTTCGAAGCACTCACTAGGATTT  60
             ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||
Sbjct  1777  ATGTACATGAAACCTGGTAATAGTGTAAAAGATTACATTTCTAAGCACTCACTAGGAATT  1836

Query  61    GAAGGTACAAAATGGACAGATGTTCGAGTTTTTCTCAACAGTTCGCTTTCCCGACCAATT  120
             ||||||||  ||||||||||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct  1837  GAAGGTACGCAATGGACAGATGTTCGAGTCTTTCTCAACAGTTCGCTCTCCCGACCAATA  1896

Query  121   TGCACTGGATGTATGCGCCGTTGTCCATTCCCAATAGTTTTCAAAGGCTACAACACAATC  180
             ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  1897  TGCACCGGATGTATGCGCCGTTGTCTATTCCCAATAGTTTTCAAAGGCTACAACACAATC  1956

Query  181   TTTTGTTCTTGGGATTGTATTGGATATGGCGACACGGTGTTTGATCATCCA  231
             |||||||||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct  1957  TTTTGTTCTTGGGAGTGTATTGGATATGGCGACACAGTGTTTGAGCATCCA  2007


> AT3G26560.1 | Symbols:  | ATP-dependent RNA helicase, putative 
| chr3:9749904-9753772 REVERSE LENGTH=3778
Length=3778

 Score =  289 bits (156),  Expect = 4e-77
 Identities = 170/177 (96%), Gaps = 0/177 (0%)
 Strand=Plus/Plus

Query  652   TACATGAGGGAAGTGACTGTGATTGACCCAAAATGGCTTGTTGAGTTAGCTCCAAGGTTC  711
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  3384  TACATGAGGGAAGTGACTGTGATTGACCCAAAGTGGCTTGTTGAGTTAGCTCCAAGGTTC  3443

Query  712   TTTAAAGTCTCTGACCCAACGAAAATGAGCAAGCGTAAGCGCCAAGAACGGATTGAGCCT  771
             || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct  3444  TTCAAAGTGTCTGACCCAACAAAAATGAGCAAGCGTAAGCGCCAAGAACGGATTGAGCCG  3503

Query  772   TTGTATGATCGTTACCACGAGCCTAACTCATGGCGTCTCAGCAAAAGACGTGCTTGA  828
             |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  3504  TTGTATGACCGTTACCACGAGCCTAACTCATGGCGTCTCAGCAAAAGGCGTGCTTGA  3560



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40338020041


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5