BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347039
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26770.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1120 0.0
> AT3G26770.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr3:9845396-9847148 FORWARD LENGTH=1088
Length=1088
Score = 1120 bits (606), Expect = 0.0
Identities = 677/712 (95%), Gaps = 2/712 (0%)
Strand=Plus/Plus
Query 79 GTGATCGCCGACTTAGATGCGGAAACCGGGATTAAAACCGCTAAAGAACTAGGCTCAGCG 138
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| | |
Sbjct 309 GTGATCGCCGACTTAGACGCGGAAACCGGGACAAAAACCGCTAAAGAACTAGGCTCGGAG 368
Query 139 GCAGAGTTTGTGCGGTGTGATGTCACGGTGGAGGCGGATATCGCTGGAGCCGTGGAAATG 198
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 369 GCAGAGTTTGTGCGGTGTGATGTCACGGTGGAGGCTGATATCGCTGGAGCCGTGGAAATG 428
Query 199 ACGGTGGAGCGGTACGGGAAGCTAGACGTGATGTACAACAACGCTGGGATTGTGGGACCC 258
|||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 429 ACGGTGGAGCGGTATGGGAAGCTAGACGTGATGTACAATAACGCTGGGATTGTTGGACCT 488
Query 259 ATGACTCCGGCCAGCATATCGGAGCTTGATATGACGGAGTTCGAGAGAGTGATGAGGATT 318
|||||||| || ||||||||| ||||||||||||| || ||||||||||| |||||||||
Sbjct 489 ATGACTCCAGCGAGCATATCGCAGCTTGATATGACAGAATTCGAGAGAGTAATGAGGATT 548
Query 319 AATGTTTTTGGGGTTGTCTCCGGCATCAAACACGCCGCCAAGTTTATGATTCCGGCTAGG 378
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 549 AATGTTTTTGGTGTTGTCTCCGGCATCAAACACGCCGCTAAGTTTATGATTCCGGCTAGG 608
Query 379 TCAGGATGCATTTTGTGCACATCAAGCGTTGCAGGCGTGACTGGAGGGTTGGCTCCACAT 438
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 TCTGGATGCATTTTGTGCACATCAAGCGTTGCAGGCGTGACTGGAGGGTTGGCTCCACAT 668
Query 439 TCATATACAATCTCAAAGTTCACAATTCCCGGAATAGTCAAGTCGGCAGCAAGCGAGCTC 498
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 669 TCATACACAATCTCAAAGTTCACAACTCCCGGAATAGTCAAGTCGGCAGCAAGCGAGCTC 728
Query 499 TGCCAACACGGAGTGCGTATCAACTGTATCTCACCGGCTACGGTGGCTACACCGCTCACT 558
||| ||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 729 TGCGAACACGGCGTGCGTATAAACTGTATCTCACCGGGTACGGTGGCTACACCGCTCACT 788
Query 559 CTCCGTTACCTTC-GTAAAGTGTTCCCGAAGGTATCGGAGGAGAAGCTACGCGAAACAGT 617
||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 789 CTCAGTTACCTTCAG-AAAGTGTTTCCGAAGGTATCGGAGGAGAAGCTACGCGAAACAGT 847
Query 618 GAAAGGAATGGGTGAGTTAAAAGGAGCTGAGTGTGAAGAAGCTGACGTTGCTAAAGCTGC 677
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 848 GAAAGGAATGGGTGAGTTAAAAGGAGCTGAGTGTGAAGAAGCTGACGTGGCTAAGGCTGC 907
Query 678 TCTGTATTTGGCCTCCAACGACGGTAAATACGTTACTGGCCATAACTTGGTCGTGGACGG 737
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 908 TTTGTATTTGGCTTCCAACGACGGTAAATACGTTACTGGCCATAACTTGGTCGTGGATGG 967
Query 738 TGGCATGACTGCTTTCAAAATAGCTGGTTTTCCTTTTCCTTCGGAATCATGA 789
||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 968 TGGCATGACTGCTTTCAAAATAGCTGGTTTTCCTTTTCCTTCGGATTCATGA 1019
Score = 115 bits (62), Expect = 6e-25
Identities = 76/82 (93%), Gaps = 3/82 (4%)
Strand=Plus/Plus
Query 1 ATGGCGGCC---GTACTGATCAGATCCGTCGTTAGAAACTTTAAACGGCCAGCCACCGCA 57
||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 99 ATGGCGGCCATAGTACTGATCAGATCTATCGTCAGAAACTTTAAACGGCCAGCCACCGCA 158
Query 58 GCCTCAGCCGCTTACTCGACAG 79
||||||||||||||||||||||
Sbjct 159 GCCTCAGCCGCTTACTCGACAG 180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38378888308
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5