BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347050
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
AT3G26850.1 | Symbols: | histone-lysine N-methyltransferases |... 1232 0.0
> AT3G26850.1 | Symbols: | histone-lysine N-methyltransferases
| chr3:9896231-9898006 REVERSE LENGTH=1461
Length=1461
Score = 1232 bits (667), Expect = 0.0
Identities = 758/802 (95%), Gaps = 5/802 (1%)
Strand=Plus/Plus
Query 1 ATGAATTTTCAGACAGAGGTTCCTGATGATGGTTCTAGACAAGCTTCTTCTTCGCCTTAC 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 ATGACTTTTCAGACAGAGGTTCCTGATGATGGTTCTAGACAAGCTTCTTCTTCGCCTTAC 413
Query 61 TCTGGAAAAG-CAAAGATTGTTCCTGAATGTGGTCTTGTTGGTGACATGTATGATCCTTT 119
|||||||||| ||| ||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 414 TCTGGAAAAGGCAA-GATTGTTCCGGAATGTGGTCTTGTTGGTGATATGTATGATCCTTT 472
Query 120 TGTAGACAGCTTTGAACCAGCGTCTGTGAAATTAGATTGTGTTCAGGAGCATGAACCAGA 179
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 TGTAGACAGTTTTGAACCAGCGTCTGTGAAATTAGATTGTGTTCAGGAGCATGAACCAGA 532
Query 180 TAACGAAGTCTTGTGCATTGTACCAAAGGCGAGCATTTCCTCGAATAGACCGCTTAGTAT 239
|||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 533 TAACGA---CTTGTGCATTGTACCGAAGGCGAGCATTTCTTCGAATAGACCGCTTAGTAT 589
Query 240 GGAAGAAAACAACCAAGGTGTTGATAAGCAAGCTCTAAGTGAGTCAGACGTGACTGCTCG 299
||||||||||||||||| |||||||||| || || || |||||||||| ||||||||||
Sbjct 590 GGAAGAAAACAACCAAGCTGTTGATAAGGAACCTTTATGTGAGTCAGAAATGACTGCTCG 649
Query 300 GGTCAGTGTTTCCTCCAACAAACCAGCTGATGTTGAAGAAAACACCACAGGAATTGAGAT 359
||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||
Sbjct 650 GGTCAGTGTTTCCTCGAACAAACCAGCTGATGTTGAAGAAAACACTGCTGGAATTGAGAT 709
Query 360 TGGAGTAGTTGTTTCTGGAGAGAACGATGAGTTTGGTGAGAATGTGGACAATGGAAGAGA 419
||||| |||||||||||||||| | |||||||||||| ||||||||||| ||||||||||
Sbjct 710 TGGAGAAGTTGTTTCTGGAGAGGATGATGAGTTTGGTAAGAATGTGGACGATGGAAGAGA 769
Query 420 ATGTAACAGCCATGAGACTTTGACTCCAAACTCTGATAACGAGAATCCGAAGGTAGAGAA 479
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 770 ATGTAATAGCCATGAGACTTTGACTCCAAACTCTGATAATGAGAATCCGAAGGTAGAGAA 829
Query 480 CAATGTACATGAAGGCGATAACACGGGGAAAAAGTCTCGAGAGAAATCAAAGGAGAGAGA 539
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 830 CAATGTACATGAAGGCGATAACACAAGGAAAAAGTCTCGAGAGAAATCAAAGGAGAGAGA 889
Query 540 TTCGTCAAGGTCCATGAAGCTTTTCAAAGTTGTGCTTACAAAATTCGTCAAGGATCTTCT 599
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 890 TTCATCAAGGTCCATGAAGCTTTTCAAAGTCGTGCTTACAAAATTCGTCAAGGATCTTCT 949
Query 600 AAAACCATCGTGGAGACAAGGGAATATGAGCAAAGAAGCGTTTAAGACTATCGTGAAGAG 659
|||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 950 GAAACCATCGTGGAGACAAGGGAATATGAGCAAGGAGGCGTTTAAGACTATTGTGAAGAG 1009
Query 660 AGTGGTGGATAAAGTGTCAAACTCAATGGAGGGTCATCGTATACCCAAATCAAGAGCTAA 719
||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1010 AGTGGTGGATAAAGTATCAAACTCAATGGAGGGTCGTCGTATTCCCAAATCAAGAGCTAA 1069
Query 720 GATCGATAGGTACATTGATTCTTCACAGCAGAAGCTGACCAAACTGGTCATGGGTTATGT 779
|||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1070 GATCGATAAGTACATTGATTCTTCACAGCAGAAGCTTACCAAACTGGTTATGGGTTATGT 1129
Query 780 AGACAAATATGTCAAAGCATAG 801
|||||| |||||||||||||||
Sbjct 1130 AGACAAGTATGTCAAAGCATAG 1151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38981698072
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5