BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347067
Length=891
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27025.1 | Symbols: | unknown protein; Has 25 Blast hits to... 1133 0.0
> AT3G27025.1 | Symbols: | unknown protein; Has 25 Blast hits
to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa
- 1; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:9969705-9971268 FORWARD LENGTH=1084
Length=1084
Score = 1133 bits (613), Expect = 0.0
Identities = 808/897 (90%), Gaps = 33/897 (4%)
Strand=Plus/Plus
Query 1 ATGAAGCTGCTAAGTTGGATGCGAACAATAAAGCCAAATGGCTTAAACCCATCAAAGGAG 60
|||||||||||||||||||||||||| |||||||| ||||||||| || |||||||| ||
Sbjct 31 ATGAAGCTGCTAAGTTGGATGCGAACGATAAAGCCTAATGGCTTAGACTCATCAAAGAAG 90
Query 61 TTCAAAGGTGATTTCTGTTGTCTAAGAGCTCAGG-TTTC-C-GAAGTCCAAGACATCCGC 117
|||||||||| ||| ||| ||||||||||||||| |||| | || |||||||||||||||
Sbjct 91 TTCAAAGGTGGTTTATGTAGTCTAAGAGCTCAGGTTTTCTCTGATGTCCAAGACATCCGC 150
Query 118 ACAAACTCCTTTTCCTTCTACGGACACACTCATGACCCGAATCCACT-CAAAGTTGAACA 176
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 151 ACAAACTCCTTTTCCTTCTACGGACACACTCATGACCCGAATCCA-TCCAAAGTTGAACA 209
Query 177 AGATCTTCGGTTTGATGAAGACGGGTTTTGCGGATTTCTAGCGATCGGGACGCTTGGTAC 236
|||||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 210 GGATCTTCGGTTTGATGAAGACGAATTTTGCGGATTTCTGGCCATCGGGACGCTTGGTAC 269
Query 237 AGAGCCTGAGACACCAAAGTTCTCAGCTATGGTTTCAGAAGAAGATGTAACCGGAGAAAG 296
||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 270 AGACCCTGAGACACCAAAGTTCTCAGCTATGGTTGCAGAAGAAGATGCAACCGGAGAAAT 329
Query 297 AAAGGAAATGGCCAAGCTCATTACTGAGAAACTAGACAAGTTTCTTAAGGAATATCCTGA 356
||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 330 CAAGGAGATGGCCAAGCTCATTGCTAAGAAACTAGACCAGTTTCTTAAGGAATATCCTGA 389
Query 357 GAATACTAGCAGTAATCGGGTCGAAAGATCGGATGCAAAAGAAGACAGAGATTCCCATGC 416
| ||||||| ||||| ||||| ||| | || | | || |||
Sbjct 390 GGATACTAGAAGTAAGCGGGT--AAA-A----AT--------A-TC---GA-----ATGA 425
Query 417 ATGTTCTCTACAAGATTATGATCTCTTTCGATCATCCATTGAGCTTACGAAGAGAAGCAA 476
|||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 426 ATGTCCTCTACAAGATTATGATCTCTTTCGATCATCCATTGAGCTTACCAAGGGAAGCAA 485
Query 477 TGGAAGAGTAAAGAAGAAAAAGAGTTTACTTACTAGTCTCTTCAAGATGAGACAAAGAGT 536
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||
Sbjct 486 TGGAAGAGTAAAGAAGAAAAAGAGTTTACTTACGAGTCTCTTCAAGAGGAGACAAACAGT 545
Query 537 ACAAGGAGAGCCTTACATAGAGAAACATAGCACAAGAGATGCGATTAAAAGGGTATTTAA 596
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 ACAAGGAGAACCTTACATAGAGAAACATAGCACAAGAGATGCGATTAAAAGGGTATTTAA 605
Query 597 AAAGCTTCATGGATCTTCTTCAAGGACAAGAAATAATGATGAAGATGATTCTATGCCCAA 656
||||||||||||| ||||||||| |||||||||| |||||||||||||||||||| ||||
Sbjct 606 AAAGCTTCATGGAGCTTCTTCAAAGACAAGAAATGATGATGAAGATGATTCTATGTCCAA 665
Query 657 GGAGAAGAAAGCTCTTAAAAAGAGTGTTCAAACTTGCCGGA-GTAAAGTCCACCCTGTTC 715
| ||||||||| ||| ||||||| ||||||||| ||||| | ||||||||||||||||||
Sbjct 666 GAAGAAGAAAGATCTCAAAAAGAATGTTCAAACCTGCCG-ACGTAAAGTCCACCCTGTTC 724
Query 716 TCTATACACCTGCAACTGCA-AGAGACGATAATGAGATAGATGACAGAAGAAAAGTGGAT 774
||| |||| |||||| | || | ||||||||| |||||||||||||||||||||||||||
Sbjct 725 TCTGTACAACTGCAATTCCACA-AGACGATAACGAGATAGATGACAGAAGAAAAGTGGAT 783
Query 775 CTAAAGGTCCCTAATCTTACTGAAGGGTTTCTCGGTGCAAGTTCCATCTCCGAAGCGAAC 834
|| |||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 784 CTCAAGGTCCCTAGTCTTACTGGAGGGTTCCTCGGTGCAAGTTCCATCTCCGAAGCGAAC 843
Query 835 AGGAATCGCGAAAACTGGATTAAGACCGACACAGAGTATCTTGTTCTGGAGCTGTGA 891
||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 844 AGGAAACGAGAAAACTGGATCAAGACCGACACAGAGTATCTTGTTCTGGAGCTGTGA 900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43502771302
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5