BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347077
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27100.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 436 5e-122
> AT3G27100.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Transcription factor, enhancer of
yellow 2 (InterPro:IPR018783); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa
- 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink). | chr3:9994545-9996025
REVERSE LENGTH=745
Length=745
Score = 436 bits (236), Expect = 5e-122
Identities = 261/273 (96%), Gaps = 2/273 (1%)
Strand=Plus/Plus
Query 21 GAAACACTCGGTGAATCGGCCTCCGACACCTGATGAAGACGATGCAGCGGAAT-ATTTCG 79
|||||| ||||||||||||||||||||||| ||||||||||||| |||| || |||||
Sbjct 105 GAAACATTCGGTGAATCGGCCTCCGACACCAGATGAAGACGATGTGGCGG-ATGGTTTCG 163
Query 80 AGAAAGACGAGGTCACGCTTCGAGAAATCATCAACGTCAAGTTGGTGGAGAGTGGTGAGA 139
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 164 AGAAAGACAAGGTCACGCTTCGAGAAATCATCAACGTCAAGTTGGTGGAGAGTGGAGAGA 223
Query 140 AGGAGAATCTAATGGAGCTTGTGAGAGATAGATTGGTGGAGTGTGGTTGGAAAGATGAGA 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 AGGAGAATCTAATGGAGCTTGTGAGAGATAGATTGGTGGAGTGTGGTTGGAAAGATGAGA 283
Query 200 TGAGAATTGCTTGCAGGGAGCATGTAAAGAAGAAAGGAAGAAAAGATGTTACAGTCGATG 259
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 284 TGAGAATTGCTTGCAGGGAGCATGTAAAGAAGAAAGGGAGAAAAGATGTTACAGTCGATG 343
Query 260 AACTGATCCGAGTGATCACACCAAAAGGCAGAG 292
||||||||||||||||||| || ||||||||||
Sbjct 344 AACTGATCCGAGTGATCACTCCTAAAGGCAGAG 376
Score = 124 bits (67), Expect = 4e-28
Identities = 73/76 (96%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 291 AGCTTCGGTACCAGATTCTGTGAAGGCAGAGCTGTTGAACCGAATTCAAAACTTCATTGT 350
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 472 AGCTTCAGTACCAGATTCTGTGAAGGCAGAGCTGTTGAACAGAATTCAAAACTTCATTGT 531
Query 351 ATCAGCTTCTCTTTGA 366
||||||| ||||||||
Sbjct 532 ATCAGCTGCTCTTTGA 547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17191570158
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5