BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347079
Length=1983
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27130.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1511 0.0
AT3G27120.1 | Symbols: | P-loop containing nucleoside triphosp... 1413 0.0
> AT3G27130.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: P-loop containing nucleoside triphosphate hydrolases
superfamily protein (TAIR:AT3G27120.1); Has 20 Blast hits
to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:10002659-10004281 REVERSE
LENGTH=1101
Length=1101
Score = 1511 bits (818), Expect = 0.0
Identities = 939/998 (94%), Gaps = 6/998 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGGAAAGCGTTCGTCGCCGTTTTCTTCTCCGTTACTGAGACCACCACCGGAGCTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 91 ATGGCGGGAAAGCGTTCGTCGCCGTTTTCTTCTCCGTTACTGAGACCACCACCGGAGTTT 150
Query 61 CTGAATGTGAAGGAGGAAGGAGAAACGGAGACGTCGTGCTGGAGAAAGGAGGTAGACGAG 120
||||||||||||||||||||||||||||||||| |||| ||||||||||| || || |||
Sbjct 151 CTGAATGTGAAGGAGGAAGGAGAAACGGAGACGCCGTGTTGGAGAAAGGAAGTGGATGAG 210
Query 121 AACTTGAAGCGTCTCCAATCGCTGCTCTTCGGCGCCGACCAATTCCTTGAGAAATCTGAT 180
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 211 AACTTGAAGCGTCTCCAATCGCTGCTCTTCGGCGCCGACAAATTCCTGGAGAAATCTGAT 270
Query 181 TTCTCCTCCGCTCAGATCCTTGGGCTTCGTCTTCTAGGTTTCCTCGATTCTCGCTCTGTT 240
||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 271 TTCTCTTCTGCTCAGATCCTTGGGCTTCGTCTTCTAGGTTTCCTCGATTCTCGTTCTGTC 330
Query 241 ACTGACGCCGATCGTGATTTCATTGGTCCCATTCGCCGTGAAGTTGCTTCTAAGGTCGAT 300
||||||||||||||||||||||||||||||||||| ||||||||||| |||||| | |||
Sbjct 331 ACTGACGCCGATCGTGATTTCATTGGTCCCATTCGTCGTGAAGTTGCCTCTAAGATTGAT 390
Query 301 TTAGCTTTGGAAGGACTCGTTTCAGATTCGGATCGGAAAGCGTTTGAGCTTGCAAATACA 360
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 391 TTAGCTTTGGAAGGCCTCGTTTCAGATTCGGATCGGAAGGCGTTTGAGCTTGCAAATACA 450
Query 361 GTTCCAGGACCTATTTTTGGCAGC-AA-----ATTTGATGTGGAAAAGATTAAGCAGTCA 414
| |||||| | |||||||||||| || |||||||||||||||||||||||||||
Sbjct 451 GCTCCAGGGGCAATTTTTGGCAGCAAAGGTGGATTTGATGTGGAAAAGATTAAGCAGTCT 510
Query 415 AAACACTTTAGTTTTCATGTCAGTCAATCTAATGGAAAGGGTGTTAAGGAGATGGAAGAG 474
|| ||||| |||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 511 AAGTACTTTGGTTTTCATGTCAGTCAATCTAACGGAAAGGGTGTTAAAGAGATGGAAGAA 570
Query 475 CGACAGGATACTGATAAGTTGATTCCCAAAGCACCAAAGTCAATGATGCAAGCCAAACTG 534
|| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 CGGCATGATACGGATAAGTTGATTCCCAAAGCACCAAAGTCAATGATGCAAGCCAAACTG 630
Query 535 ACATCATTGTATGGAAACAGCATTGGTAAACCAGATAATCAGCGAAAAACTTCTGTGAAC 594
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 631 ACATCATTGTATGGAAACAGTATTGGTAAACCAGATAATCAGCGCAAAACTTCAGTGAAC 690
Query 595 AATCAAGACCGTGCCTCTGATGAATGTGTCATTGTCGAGAGAAGTCATGGATTTGGTTTT 654
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 691 AATCAAGACCGTGCCTCTGATGAATGTGTCATTGTTGAGAGAAGTCATGGATTTGGTTTT 750
Query 655 GGAACAAAGCGAACTCATGCAGAAACCAGCAGTCTCGCAAATGATGGGGAAATAAAGGCA 714
|||||||||||| |||||||||||||||| || || ||||||||||||||| |||||| |
Sbjct 751 GGAACAAAGCGACCTCATGCAGAAACCAGTAGCCTTGCAAATGATGGGGAAGTAAAGGAA 810
Query 715 GATGGAGCTCCTAATGGATTTGTATCCGCCAAAATAAAACTGGAAATGGATGTAAGACAA 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 GATGGAGCTCCTAATGGATTTGTATCCGCCAAAATAAAACTGGAAATGGATGTAAGACAA 870
Query 775 AGACGAGGATCAACCGAGTCACCAAGTTCTTGTCTTTCTCCACAGAGTGaaaaaaaTGCT 834
| |||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 871 AAACGAGGATCAACTGAGTCACCAAGTTCATGTCTTTCTCCACAGAGTGACAAAAATGCT 930
Query 835 TTGGGTAGGGGCTATGGTTCAAGATCGGGTGGATTAAGACGTGGATACCGTGGTAATTTT 894
|| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 931 TTAGGTAGGGGCTATGGTTCAAGGTCGGGTGGATTAAGACGTGGATACCGTAGTAATTTT 990
Query 895 GTCCCTCCTGTTAAATCTAATGGGAATAATGCTGGAAACTTGACATCTCGTATTGGTGGA 954
||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 991 GTCCCTCCTGTTAAAACTAATGGGAATAATGTTGGAAACTTGACGTCTCGTATTGGTGGA 1050
Query 955 AAGATTGACGATGCACTGGATGACTCAACCAGAACATG 992
|||| |||||||||||||||||||||||||||||||||
Sbjct 1051 AAGACTGACGATGCACTGGATGACTCAACCAGAACATG 1088
> AT3G27120.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:9999694-10003314
REVERSE LENGTH=1648
Length=1648
Score = 1413 bits (765), Expect = 0.0
Identities = 807/828 (97%), Gaps = 0/828 (0%)
Strand=Plus/Plus
Query 1156 GCTGGTCTGGAGCATGCTAAAAAGTGTGTAACTGAGATGGTCATTTGGCCATTGCTGCGT 1215
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 653 GCTGGTCTGGAGCATGCTAAAAAGTGTGTAACTGAGATGGTCATTTGGCCATTGTTGCGT 712
Query 1216 CCTGACATTTTCAAAGGTTGTCGTTCACCTGGAAAAGGACTTCTTCTCTTTGGCCCACCA 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 CCTGACATTTTCAAAGGTTGTCGTTCACCTGGAAAAGGACTTCTTCTCTTTGGCCCACCA 772
Query 1276 GGAACTGGTAAAACGATGATTGGAAAAGCTATAGCTGGAGAAGCAAAAGCAACATTTTTC 1335
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 773 GGAACTGGTAAAACAATGATTGGAAAAGCTATAGCTGGAGAAGCGAAAGCAACCTTTTTC 832
Query 1336 TATATATCAGCCAGTTCATTGACAAGCAAATGGATTGGCGAAGGTGAAAAGCTAGTGAGG 1395
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 833 TATATATCAGCCAGTTCATTGACAAGCAAGTGGATTGGCGAAGGTGAAAAGCTAGTGAGG 892
Query 1396 GCCCTTTTTGGAGTTGCGAGTTGCCGCCAGCCCGCAGTGATATTTGTAGATGAAATAGAT 1455
|||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 893 GCCCTTTTTGGAGTTGCGAGTTGCCGCCAGCCTGCAGTAATATTTGTCGATGAAATAGAT 952
Query 1456 TCTCTACTATCTCAGCGTAAGTCAGATGGTGAACATGAATCGAGTAGAAGACTCAAGACA 1515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 TCTCTACTATCTCAGCGTAAGTCAGATGGTGAACATGAATCGAGTAGAAGACTCAAGACA 1012
Query 1516 CAATTCCTGATTGAAATGGAAGGTTTTGACAGTGGCAGCGAGCAAATTCTCCTTATAGGA 1575
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1013 CAATTCCTGATTGAAATGGAAGGTTTCGACAGTGGCAGCGAGCAAATTCTCCTAATAGGA 1072
Query 1576 GCAACAAATAGACCCCAAGAGCTTGATGAAGCAGCAAGAAGACGACTAACCAAAAGACTC 1635
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1073 GCAACAAATAGACCGCAAGAGCTCGATGAAGCAGCAAGAAGACGACTAACCAAGAGACTC 1132
Query 1636 TACATTCCTCTTCCTTCATCTGAAGCAAGAGCATGGATTATACAGAATCTCCTAAAGAAA 1695
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1133 TACATTCCTCTTCCTTCATCTGAAGCAAGAGCATGGATAATACAGAATCTCCTAAAGAAA 1192
Query 1696 GATGGGTTGTTTACACTGTCGGATGATGATATGAACATCATATGCAACCTAACTGAAGGG 1755
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1193 GATGGGTTGTTTACTCTGTCGGATGATGATATGAACATCATATGCAACCTAACGGAAGGG 1252
Query 1756 TACTCAGGATCAGATATGAAGAACCTGGTGAAAGATGCAACTATGGGTCCATTAAGAGAA 1815
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 TACTCGGGATCAGATATGAAGAACCTGGTGAAAGATGCAACTATGGGTCCATTAAGAGAA 1312
Query 1816 GCTCTCAAACGAGGGATAGATATAACTAACCTGACTAAAGATGACATGCGTCTAGTAACT 1875
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 GCTCTCAAACGAGGCATAGATATAACTAACCTGACTAAAGATGACATGCGTCTAGTAACT 1372
Query 1876 CTTCAGGATTTTAAAGACGCATTGCAAGAAGTAAGGCCTTCTGTTTCTCAGAACGAACTC 1935
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 CTTCAGGACTTTAAAGACGCATTGCAAGAAGTAAGGCCTTCTGTTTCTCAGAACGAACTT 1432
Query 1936 GGAATCTACGAAAATTGGAACAATCAGTTTGGTAGTTTAAGCCTCTAA 1983
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1433 GGAATCTATGAAAATTGGAACAATCAGTTTGGTAGTTTAAGCCTCTAA 1480
Score = 1062 bits (575), Expect = 0.0
Identities = 627/653 (96%), Gaps = 0/653 (0%)
Strand=Plus/Plus
Query 468 GGAAGAGCGACAGGATACTGATAAGTTGATTCCCAAAGCACCAAAGTCAATGATGCAAGC 527
|||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGAAGAACGGCATGATACGGATAAGTTGATTCCCAAAGCACCAAAGTCAATGATGCAAGC 60
Query 528 CAAACTGACATCATTGTATGGAAACAGCATTGGTAAACCAGATAATCAGCGAAAAACTTC 587
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 61 CAAACTGACATCATTGTATGGAAACAGTATTGGTAAACCAGATAATCAGCGCAAAACTTC 120
Query 588 TGTGAACAATCAAGACCGTGCCTCTGATGAATGTGTCATTGTCGAGAGAAGTCATGGATT 647
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 AGTGAACAATCAAGACCGTGCCTCTGATGAATGTGTCATTGTTGAGAGAAGTCATGGATT 180
Query 648 TGGTTTTGGAACAAAGCGAACTCATGCAGAAACCAGCAGTCTCGCAAATGATGGGGAAAT 707
||||||||||||||||||| |||||||||||||||| || || ||||||||||||||| |
Sbjct 181 TGGTTTTGGAACAAAGCGACCTCATGCAGAAACCAGTAGCCTTGCAAATGATGGGGAAGT 240
Query 708 AAAGGCAGATGGAGCTCCTAATGGATTTGTATCCGCCAAAATAAAACTGGAAATGGATGT 767
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAAGGAAGATGGAGCTCCTAATGGATTTGTATCCGCCAAAATAAAACTGGAAATGGATGT 300
Query 768 AAGACAAAGACGAGGATCAACCGAGTCACCAAGTTCTTGTCTTTCTCCACAGAGTGaaaa 827
|||||||| |||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 301 AAGACAAAAACGAGGATCAACTGAGTCACCAAGTTCATGTCTTTCTCCACAGAGTGACAA 360
Query 828 aaaTGCTTTGGGTAGGGGCTATGGTTCAAGATCGGGTGGATTAAGACGTGGATACCGTGG 887
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 361 AAATGCTTTAGGTAGGGGCTATGGTTCAAGGTCGGGTGGATTAAGACGTGGATACCGTAG 420
Query 888 TAATTTTGTCCCTCCTGTTAAATCTAATGGGAATAATGCTGGAAACTTGACATCTCGTAT 947
|||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||
Sbjct 421 TAATTTTGTCCCTCCTGTTAAAACTAATGGGAATAATGTTGGAAACTTGACGTCTCGTAT 480
Query 948 TGGTGGAAAGATTGACGATGCACTGGATGACTCAACCAGAACATGTTTGGAGATGCTCTG 1007
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGGTGGAAAGACTGACGATGCACTGGATGACTCAACCAGAACATGTTTGGAGATGCTCTG 540
Query 1008 TGGTCCTGATGGTGAGCTTCCCGAGAAGTTGAGAAATTTGGAACCTCGTCTTATAGAGCA 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGGTCCTGATGGTGAGCTTCCCGAGAAGTTGAGAAATTTGGAACCTCGTCTTATAGAGCA 600
Query 1068 TGTCAGCAATGAGATTATGGATCGAGACCCCAATGTCCGCTGGGATGATATTG 1120
||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGTCAGCAACGAGATTATGGATCGAGACCCCAATGTCCGCTGGGATGATATTG 653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98242466565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5