BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg347129

Length=600
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G27520.1 | Symbols:  | unknown protein; Has 28 Blast hits to...   719    0.0  


> AT3G27520.1 | Symbols:  | unknown protein; Has 28 Blast hits 
to 28 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:10192422-10193499 FORWARD 
LENGTH=999
Length=999

 Score =  719 bits (389),  Expect = 0.0
 Identities = 520/581 (90%), Gaps = 18/581 (3%)
 Strand=Plus/Plus

Query  30   TCCTATAGACGGAGACGAAGATTGGGAACT-TTAC-AACGACGACGGCTTCGTTTACAAA  87
            ||| |||||||||||||||||||||||| | |||| || ||||| |||||||||||||| 
Sbjct  87   TCC-ATAGACGGAGACGAAGATTGGGAA-TGTTACGAA-GACGATGGCTTCGTTTACAAT  143

Query  88   CGGAAAAAGCGAAGCCGTATCGCCGACGCTGAAGAAACATCGAAACCGCCGGATCCAGAG  147
            || |||||||||| |||| |||||||||||||||||||||| |||||||||||||| |||
Sbjct  144  CGAAAAAAGCGAACCCGTTTCGCCGACGCTGAAGAAACATCAAAACCGCCGGATCCGGAG  203

Query  148  TTAGATCCGGTGGTAGAGGAGAGGAATCGAAGGATACGGAAGAAGAGAATACTGGTGAAG  207
            ||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct  204  TTAGATCGGGTGGTAGAAGAGAGGAATCGAAGGATACGGAAGAAGAGATTACTGGTGAAG  263

Query  208  CTCAAAAGAAAGTACCAGAGTGAGATCGAGCAGTGGGAGATTTTGTCGAACAGTTTGAAT  267
            ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||
Sbjct  264  CTCAAAAGAAAGTACCAGAGTGAGATCGACCAGTGGGAGATTTTATCGAATAGTTTCAAT  323

Query  268  TCTATGCAAGTGAAAGCAGATCGATTTCAAACGACGCAGCGAGAAGAGATGTCAAATGCT  327
             ||||||||| |||||||||||||||||||||| ||||  ||||||||| || |||||| 
Sbjct  324  GCTATGCAAGAGAAAGCAGATCGATTTCAAACGGCGCAAAGAGAAGAGAGGTTAAATGCG  383

Query  328  AAAGAGACGATCTCGTTTCCTGAGAATGCTTCCTATACTAA-AGAAGGA-GCTCGAGAAT  385
            || || ||||| |||||||||| |||| |||||| ||| || ||||||| || |||||||
Sbjct  384  AACGAAACGATGTCGTTTCCTGGGAATTCTTCCTCTAC-AACAGAAGGAGGC-CGAGAAT  441

Query  386  TTGGTGGAGAAGATGCTTCT--G-CGCCGTCGTCTATGCTCGACCAACTTCTTTTTATGG  442
            |||| |||||||||||||||  | ||||||||||||||||||||||||||||||||| ||
Sbjct  442  TTGGCGGAGAAGATGCTTCTAAGTCGCCGTCGTCTATGCTCGACCAACTTCTTTTTACGG  501

Query  443  CGG-AAGCACAAGAAGCGGTGATTAATGACGTCTCGAAGTTGTGTGAAG-TAGCAGAGAA  500
             || ||| |||||||||||| || || || ||||| ||| | ||||||| || |||||||
Sbjct  502  TGGAAAG-ACAAGAAGCGGTAATCAACGAAGTCTCAAAGCTATGTGAAGTTA-CAGAGAA  559

Query  501  CATATGTAGAATTGAAGAAGAAGAGAA-GAGGCAGTCCTTCTTTGATCTTCCCATATGGA  559
            |||||||||| | ||||||||||| || || |||||||||||||||||||||||||||||
Sbjct  560  CATATGTAGAGTGGAAGAAGAAGA-AACGAAGCAGTCCTTCTTTGATCTTCCCATATGGA  618

Query  560  GCTCACCAACGGATCTAATGACGTCGCTTTGTGGTGATTAA  600
            |||||||||||||||||||| | ||||||||||||||||||
Sbjct  619  GCTCACCAACGGATCTAATGGCATCGCTTTGTGGTGATTAA  659



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28884634525


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5