BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347136
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27600.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/su... 459 4e-128
> AT3G27600.1 | Symbols: | SWAP (Suppressor-of-White-APricot)/surp
RNA-binding domain-containing protein | chr3:10223743-10224948
REVERSE LENGTH=942
Length=942
Score = 459 bits (248), Expect = 4e-128
Identities = 435/520 (84%), Gaps = 33/520 (6%)
Strand=Plus/Plus
Query 312 TTACATTTCCAAAGGTGGGTTGGTGTTTGAG-AGCGTCATGAGGCATCTTGTTGCAGATG 370
||||||||||| || ||||||||| ||||| || || |||||| ||||||||| || ||
Sbjct 9 TTACATTTCCACTGGAGGGTTGGTGGTTGAGAAG-GTGATGAGGTATCTTGTTGTAGGTG 67
Query 371 AAGCAAGATACAGCTTTATGGCTAGTTCCCATCCCTTTCACGCGTTTTACCAGCAGAA-G 429
| |||||||||| |||||||| || ||| | ||||||||| ||||||||||||| || |
Sbjct 68 ACGCAAGATACAACTTTATGGGTATTTCAGACCCCTTTCACCCGTTTTACCAGCA-AAGG 126
Query 430 CTTACCGAATATCGTTCTATCAATCAACAAGACGGAGGAGCTAATCTTGATTATGATGCT 489
|||||| | || |||||| | |||||||||||| || ||||||||||||||||||||||
Sbjct 127 CTTACCCAGTACCGTTCTCTGAATCAACAAGAC-GA--AGCTAATCTTGATTATGATGCT 183
Query 490 ACTCTTGCTGTTTACAAGCAAAAGGCTACCGAATTCCGTTCTTGGATTCAACAAGAGGGA 549
|||||||||| ||||| || ||||||||| |||||||||||| |||||||||||||||||
Sbjct 184 ACTCTTGCTGCTTACATGCGAAAGGCTACTGAATTCCGTTCTCGGATTCAACAAGAGGGA 243
Query 550 GCTAATCTTGATTATGATGCTGATGCTGCTGGTCAACGCATTGTTCTGCCATATTTTCTC 609
||||||||||| |||||| || || ||||||||||||||||||||||||| || ||||
Sbjct 244 CCTAATCTTGATGATGATGATGCTGATGCTGGTCAACGCATTGTTCTGCCACATCTTCTG 303
Query 610 GACCT-TAGACTTCCTAAAGGGATGAGTGGCAAGGATTTTAGAACTATGAAGCTCACAGC 668
||| | ||||||||| ||||||||||||| |||| |||| |||||||| ||||||||| |
Sbjct 304 GAC-TATAGACTTCCAAAAGGGATGAGTGTCAAGAATTT-AGAACTATCAAGCTCACAAC 361
Query 669 TCAGTTTGGGGCTTGGTATGGAAACGATTTCTGGCTGGGGTTCAAGAACAGAGATGGGTT 728
||||||||||||||| | || | | | || | ||||||| ||
Sbjct 362 ACAGTTTGGGGCTTGG---G-------TT-CAAG--G------AA-A---GAGATGGATT 398
Query 729 TGAGTTTACGAATCCAACTGATAGCAAGTTCCCACGTTTCACTCGGTTTGTTCTCGAGTA 788
|||||||||||||||||||||||| ||||||||||| ||||||| |||||||| |||||
Sbjct 399 TGAGTTTACGAATCCAACTGATAGTAAGTTCCCACGATTCACTCTATTTGTTCTTGAGTA 458
Query 789 TTCAGAAGTATTTAATCCCCCTAAAGATTTGAAAGAAAAG 828
||||||||||||||| | ||||||||| |||||||||||
Sbjct 459 TTCAGAAGTATTTAAGGCACCTAAAGATCTGAAAGAAAAG 498
Score = 355 bits (192), Expect = 6e-97
Identities = 256/287 (89%), Gaps = 4/287 (1%)
Strand=Plus/Plus
Query 1011 TGG-TGTCGAAGGTCGTGAGGTAAACATCATTGAGAAAACAGTGCAGTCGTTATCGGAAA 1069
||| ||| || ||||||||| ||||||| |||||||||||||||||||||||||| ||||
Sbjct 656 TGGATGTTGATGGTCGTGAGCTAAACATTATTGAGAAAACAGTGCAGTCGTTATCTGAAA 715
Query 1070 ACGTGGCGAGTTTCAAGGAGAAAATAGCCGAGGAGGT-CCGAAGTATCCCACCAGAGAAA 1128
|||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||
Sbjct 716 ACGTGGCGAGTTTCAAGGAGAAAATAGCCGCGGATAAACCGAAGAATCCCACCAGAGAAG 775
Query 1129 CAGGTGTTATTCGGAAAAGCCGGGTTGTTGAAGGACAACAACAGGTCACTAGCACATTAC 1188
|||||| ||||||||||| |||||||||| ||||||||||||| |||||||||| ||||
Sbjct 776 CAGGTGATATTCGGAAAATCCGGGTTGTTAAAGGACAACAACAAGTCACTAGCATATTAA 835
Query 1189 AATGTGGGAGCAGGAGAAATCCTTACTCTGTCCTTGTGTACGTGTGGGAGAGAGACAGAT 1248
||||| ||||||||||||||||| ||| |||| || ||||||||||||||| ||||||||
Sbjct 836 AATGTAGGAGCAGGAGAAATCCTCACTTTGTCATTCTGTACGTGTGGGAGATAGACAGAT 895
Query 1249 TTGGACAAGCCTTGTTGT-TGCACGGAATTGTTTAACAACGCACTTG 1294
|||||||||||||||| | ||||||||| ||||| | |||||||||
Sbjct 896 TTGGACAAGCCTTGTT-TATGCACGGAAATGTTTTTCGACGCACTTG 941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65561911770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5