BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347138
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27620.1 | Symbols: AOX1C | alternative oxidase 1C | chr3:10... 1421 0.0
AT3G22360.1 | Symbols: AOX1B | alternative oxidase 1B | chr3:79... 1123 0.0
AT3G22370.1 | Symbols: AOX1A, ATAOX1A | alternative oxidase 1A ... 767 0.0
> AT3G27620.1 | Symbols: AOX1C | alternative oxidase 1C | chr3:10229045-10230702
REVERSE LENGTH=1341
Length=1341
Score = 1421 bits (769), Expect = 0.0
Identities = 924/998 (93%), Gaps = 13/998 (1%)
Strand=Plus/Plus
Query 1 ATGATCACTACATTACTCCGTCGATCTCTCCTTGACGCATCAAAGCCGGCGACATCCATT 60
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 108 ATGATCACTACATTACTCCGTCGCTCTCTCCTTGACGCATCAAAGCAAGCGACATCCATT 167
Query 61 AATGCG-ATTCTATTTCACCAACTTGCCCCAGCGGAAA-ATTTTAGGGCTCCGGCGA-TG 117
|||| | |||||||||||||||||||| ||||| |||| ||||||||| |||||| | ||
Sbjct 168 AATG-GAATTCTATTTCACCAACTTGCTCCAGC-GAAATATTTTAGGGTTCCGGC-AGTG 224
Query 118 GGAGGCT-TGAGAGATTTCAGCAAGATGATATTTGAAAAGAAGAAAACGTTGGAGGAGGA 176
||||| | ||||||||||||||||||||| |||||||||||||||||| | ||| || ||
Sbjct 225 GGAGG-TCTGAGAGATTTCAGCAAGATGACATTTGAAAAGAAGAAAACATCGGAAGAAGA 283
Query 177 GAAAAGATCTGGTGATGGCGAGAAGGCTAATGATCAAGGTAGTAACAAATGGGAACAATT 236
| || |||| ||||| |||| |||| |||||||||| | |||||||| ||||||||||
Sbjct 284 GGAAGGATCCGGTGACGGCGTCAAGGTTAATGATCAA-G--GTAACAAAGGGGAACAATT 340
Query 237 AATCGTTAGTTATTGGGGCGTGAAGCCGATGAAAATCACCAAAGAAGATGGAACTGAATG 296
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 341 AATAGTTAGTTATTGGGGCGTGAAGCCAATGAAAATCACCAAAGAAGATGGAACTGAATG 400
Query 297 GAAATGGACTTGTTTTCGGCCATGGGAGACGTATAAAGCTGATTTGACGATAGATTTGAA 356
|||||||| ||| ||||||||||||||||| |||||||||||| | ||||||||||||||
Sbjct 401 GAAATGGAGTTGCTTTCGGCCATGGGAGACTTATAAAGCTGATCTAACGATAGATTTGAA 460
Query 357 GAAGCACCATGTTCCTTCCACTTTACCGGACAAATTAGCTTATTGGATGGTTAAATCTCT 416
|||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 461 GAAGCATCATGTTCCTTCAACTTTACCGGACAAAATAGCTTATTGGATGGTTAAATCTCT 520
Query 417 TCGATGGCCTACCGATCTCTTCTTCCAGAGGCGGTATGGATGCCGAGCGATGATGTTAGA 476
|||||||||||||||||| |||||||||||| ||||||| ||||||||||| ||| ||||
Sbjct 521 TCGATGGCCTACCGATCTTTTCTTCCAGAGGAGGTATGGTTGCCGAGCGATTATGCTAGA 580
Query 477 AACGGTTGCAGCGGTGCCAGGAATGGTTGGAGGGATGCTTATGCACTTCAAATCGCTTC- 535
|||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||
Sbjct 581 GACGGTTGCAGCGGTTCCAGGAATGGTTGGAGGGATGCTTATGCACTTCAAATCTC-TCA 639
Query 536 GGCGTTTCGAACAAAGTGGGGGTTGGATTAAAGCCCTTCTTGAGGAAGCAGAGAATGAGA 595
|||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 640 GGCGTTTCGAACAAAGTGGGGGTTGGATCAAAGCCCTTCTCGAAGAAGCAGAGAATGAGA 699
Query 596 GAATGCACTTAATGACATTCATGGAAGTCGCGAAACCCAAATGGTACGAACGAGCTCTTG 655
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 700 GAATGCACTTAATGACATTCATGGAAGTAGCGAAACCCAAATGGTACGAACGAGCTCTTG 759
Query 656 TGATCGCCGTTCAAGGCGTTTTCTTCAACGCTTATTTACTCGGATACTTAATCTCCCCCA 715
||||| | |||||||| ||||||||||||||||||||| |||||||| ||||||| ||||
Sbjct 760 TGATCTCTGTTCAAGGGGTTTTCTTCAACGCTTATTTAATCGGATACATAATCTCTCCCA 819
Query 716 AATTTGCTCATCGTATGGTTGGATACCTTGAGGAAGAAGCAATACATTCTTACACCGAAT 775
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 820 AGTTTGCTCATCGTATGGTTGGATACCTTGAGGAAGAAGCAATACATTCTTACACTGAGT 879
Query 776 TTCTCAAAGAACTTGATAATGGTAACATTGAAAACGTTCCTGCACCGGCTATTGCTATTG 835
||||||||||||| ||||| |||||||| ||||| ||||||||||||||||| ||| |||
Sbjct 880 TTCTCAAAGAACTCGATAACGGTAACATCGAAAATGTTCCTGCACCGGCTATCGCTGTTG 939
Query 836 ATTACTGGAGGCTTGAAGCTGACGCAACGCTTCGTGATGTCGTCATGGTGGTTCGTGCTG 895
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 940 ATTACTGGAGGCTTGAAGCTGATGCAACGCTTCGTGATGTTGTCATGGTGGTTCGTGCTG 999
Query 896 ATGAGGCCCATCACCGTGATGTTAACCACTATGCATCCGATATTCACTACCAAGGTCATG 955
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 ATGAGGCGCATCACCGTGACGTTAACCACTATGCATCCGATATTCACTACCAAGGTCATG 1059
Query 956 AGCTGAAAGAAGCTCCAGCTCCCATAGGATATCATTGA 993
|||||||||||||||||||||| ||||||||||| |||
Sbjct 1060 AGCTGAAAGAAGCTCCAGCTCCTATAGGATATCACTGA 1097
> AT3G22360.1 | Symbols: AOX1B | alternative oxidase 1B | chr3:7904156-7905384
FORWARD LENGTH=978
Length=978
Score = 1123 bits (608), Expect = 0.0
Identities = 809/905 (89%), Gaps = 18/905 (2%)
Strand=Plus/Plus
Query 92 CGGAAAATTTTAGGGCTCCGGCGATGGGAGGCTTGAGAGATTTCAGCAAGATGATATTTG 151
|||||||| |||||| |||||||||||||| | |||||| |||||||||||||| |||||
Sbjct 89 CGGAAAATATTAGGGTTCCGGCGATGGGAGTCGTGAGAGTTTTCAGCAAGATGACATTTG 148
Query 152 AAAAGAAGAAAACGTTGGA-GGAGGAGAAAAGATCTGGTGATGGCGAGAAGGCTAATGAT 210
| ||||||||||| | | |||||||||| ||||| | | |||| ||||| ||||
Sbjct 149 AGAAGAAGAAAAC--T--ACGGAGGAGAAAGGATCTAGCGGTGGC---AAGGC---TGAT 198
Query 211 CAAGGTAGTAACAAATGGGAACAATTAATCGTTAGTTATTGGGGCGTGAAGCCGATGAAA 270
||| | |||||||| |||| |||||||||||||| || ||||| ||||||||||||||
Sbjct 199 CAA-G--GTAACAAAGGGGAGCAATTAATCGTTAGCTACTGGGGAGTGAAGCCGATGAAG 255
Query 271 ATCACCAAAGAAGATGGAACTGAATGGAAATGGACTTGTTTTCGGCCATGGGAGACGTAT 330
|||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||
Sbjct 256 ATCACCAAAGAAGATGGAACTGAATGGAAATGGAGTTGCTTTAGGCCATGGGAGACATAT 315
Query 331 AAAGCTGATTTGACGATAGATTTGAAGAAGCACCATGTTCCTTCCACTTTACCGGACAAA 390
||| | ||| |||| ||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 316 AAATCAGATCTGACTATAGATTTGAAGAAGCATCATGTTCCATCGACTTTACCGGACAAA 375
Query 391 TTAGCTTATTGGATGGTTAAATCTCTTCGATGGCCTACCGATCTCTTCTTCCAGAGGCGG 450
|||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 376 CTAGCTTATTGGACCGTGAAATCTCTTCGATGGCCTACCGATCTTTTCTTCCAGAGGCGG 435
Query 451 TATGGATGCCGAGCGATGATGTTAGAAACGGTTGCAGCGGTGCCAGGAATGGTTGGAGGG 510
|| |||||| |||| |||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 436 TACGGATGCAGAGCAATGATGCTAGAAACGGTTGCAGCGGTTCCAGGAATGGTTGGAGGG 495
Query 511 ATGCTTA-TGCACTTCAAATCGCTTCGGC-GTTTCGAACAAAGTGGGGGTTGGATTAAAG 568
||| ||| | |||| |||||||||||| | |||| |||||||| || |||||||| ||||
Sbjct 496 ATG-TTAGTACACTGCAAATCGCTTCGACGGTTT-GAACAAAGCGGTGGTTGGATCAAAG 553
Query 569 CCCTTCTTGAGGAAGCAGAGAATGAGAGAATGCACTTAATGACATTCATGGAAGTCGCGA 628
|||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 554 CCCTACTTGAAGAAGCAGAGAACGAGAGAATGCATTTAATGACATTCATGGAAGTCGCGA 613
Query 629 AACCCAAATGGTACGAACGAGCTCTTGTGATCGCCGTTCAAGGCGTTTTCTTCAACGCTT 688
|||| || ||||||||||||||||||||||| |||||||||||| |||||||||| ||||
Sbjct 614 AACCTAATTGGTACGAACGAGCTCTTGTGATTGCCGTTCAAGGCATTTTCTTCAATGCTT 673
Query 689 ATTTACTCGGATACTTAATCTCCCCCAAATTTGCTCATCGTATGGTTGGATACCTTGAGG 748
|||| || |||||| |||| || |||||||||||||||||||||||||||||||||||||
Sbjct 674 ATTTCCTTGGATACCTAATTTCTCCCAAATTTGCTCATCGTATGGTTGGATACCTTGAGG 733
Query 749 AAGAAGCAATACATTCTTACACCGAATTTCTCAAAGAACTTGATAATGGTAACATTGAAA 808
|||||||||| || |||||||| || ||||| |||||||| |||||||||||||| ||||
Sbjct 734 AAGAAGCAATCCACTCTTACACTGAGTTTCTTAAAGAACTCGATAATGGTAACATCGAAA 793
Query 809 ACGTTCCTGCACCGGCTATTGCTATTGATTACTGGAGGCTTGAAGCTGACGCAACGCTTC 868
| || ||||||||||||||||| |||||||||||||| ||||||||||| || |||||||
Sbjct 794 ATGTGCCTGCACCGGCTATTGCCATTGATTACTGGAGACTTGAAGCTGATGCGACGCTTC 853
Query 869 GTGATGTCGTCATGGTGGTTCGTGCTGATGAGGCCCATCACCGTGATGTTAACCACTATG 928
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 854 GTGATGTCGTCATGGTGGTCCGTGCTGATGAAGCGCATCACCGTGATGTTAACCACTATG 913
Query 929 CATCCGATATTCACTACCAAGGTCATGAGCTGAAAGAAGCTCCAGCTCCCATAGGATATC 988
||||||||||||| |||||||||| |||||| |||||||||||||||||||| |||||||
Sbjct 914 CATCCGATATTCATTACCAAGGTCGTGAGCTAAAAGAAGCTCCAGCTCCCATTGGATATC 973
Query 989 ATTGA 993
|||||
Sbjct 974 ATTGA 978
> AT3G22370.1 | Symbols: AOX1A, ATAOX1A | alternative oxidase 1A
| chr3:7906791-7908740 FORWARD LENGTH=1488
Length=1488
Score = 767 bits (415), Expect = 0.0
Identities = 655/769 (85%), Gaps = 24/769 (3%)
Strand=Plus/Plus
Query 237 AATCGTTAGTTATTGGGGCG-TGAAGCC-GATGAAAATCACCAAAGAAGATGGAACTGAA 294
||||| || |||||||| | |||| || || || || || ||||||||||| |||||
Sbjct 408 AATCGCGAGCTATTGGGGTGTTGAA-CCTAAT-AAGATTACTAAAGAAGATGGTTCTGAA 465
Query 295 TGGAAATGG-ACTTGTTTTC-GGCCATGGGAGACGTATAAAGCTGATTTGACGATAGATT 352
||||| ||| || || |||| |||||||||| ||||||||||||||| | |||||||||
Sbjct 466 TGGAAGTGGAAC-TG-TTTCAGGCCATGGGAAACGTATAAAGCTGATATAACGATAGATC 523
Query 353 TGAAGAAGCACCATGTTCCTTCCAC-TTTACCGGACA-AATTAGCTTATTGGA-TGGTTA 409
|||||||||| |||||||| | || ||| | || | || |||||||||||| | ||||
Sbjct 524 TGAAGAAGCATCATGTTCCAACGACGTTT-CTTGATAGAA-TAGCTTATTGGACT-GTTA 580
Query 410 AATCTCTTCGATGGCCTACCGATCTCTTCTTCCAGAGGCGGTATGGATGCCGAGCGATGA 469
|||||||||| |||||||||||| | |||||||||||| | |||||||| ||||| ||||
Sbjct 581 AATCTCTTCGTTGGCCTACCGATTTGTTCTTCCAGAGGAGATATGGATGTCGAGCTATGA 640
Query 470 TG-TTAGAAACGGTTGCAGCGGTGCCAGGAATGGTTGGAGGGATGCTTA-TGCACTTCAA 527
|| || ||||| || ||||| || || |||||||||||||| ||| ||| | |||| |||
Sbjct 641 TGCTT-GAAACTGTAGCAGCAGTACCTGGAATGGTTGGAGGAATG-TTACTACACTGCAA 698
Query 528 ATCGCTTCGGCGTTTCGAACAAAGTGGGGGTTGGATTAAAGCCCTTCTTGAGGAAGCAGA 587
||||||||| ||||| || |||||||| || |||||||| || |||||||||||||||||
Sbjct 699 ATCGCTTCGACGTTTTGAGCAAAGTGGAGGATGGATTAAGGCTCTTCTTGAGGAAGCAGA 758
Query 588 GAATGAGAGAATGCA-CTTAATGACATTCATGGAAGTCGCGAAACCCAAATGGTACGA-A 645
||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||| |
Sbjct 759 GAATGAGAGAATGCATCTTA-TGACATTCATGGAAGTCGCGAAACCGAAATGGTACGAGA 817
Query 646 CGAGCTCTTGTGATCGCCGTTCAAGGCGTTTTCTTCAACGCTTATTTACTCGGATACTTA 705
|||| || |||||| | || ||||| || ||||||||||||||||| || || ||||||
Sbjct 818 -GAGCGCTCGTGATCACTGTGCAAGGAGTCTTCTTCAACGCTTATTTCCTTGGTTACTTA 876
Query 706 ATCTCCCCCAAATTTGCTCATCGTATGGTTGGATACCTTGAGGAAGAAGCAATACATTCT 765
||||| ||||| |||||||||||||||||||| |||||||| |||||||| || ||||||
Sbjct 877 ATCTCTCCCAAGTTTGCTCATCGTATGGTTGGGTACCTTGAAGAAGAAGCGATCCATTCT 936
Query 766 TACACCGAATTTCTCAAAGAACTTGATAATGGTAACATTGAAAACGTTCCTGCACCGGCT 825
|| || || |||||||| |||||||| || ||||||||||| || |||||||| ||||||
Sbjct 937 TATACTGAGTTTCTCAAGGAACTTGACAAAGGTAACATTGAGAATGTTCCTGCTCCGGCT 996
Query 826 ATTGCTATTGATTACTGGAGGCTTGAAGCTGACGCAACGCTTCGTGATGTCGTCATGGTG 885
|||||||||||||||||||||||| ||||| || || ||||||||||| || |||||
Sbjct 997 ATTGCTATTGATTACTGGAGGCTTCCTGCTGATGCGACACTTCGTGATGTTGTGATGGTT 1056
Query 886 GTTCGTGCTGATGAGGCCCATCACCGTGATGTTAACCACTATGCATCCGATATTCACTAC 945
||||||||||| ||||| |||||||||||||| ||||| | |||||| ||||||||||||
Sbjct 1057 GTTCGTGCTGACGAGGCTCATCACCGTGATGTAAACCATTTTGCATCTGATATTCACTAC 1116
Query 946 CAAGGTCATGAGCTGAAAG-AAGCTCCAGCTCCCATAGGATATCATTGA 993
||||||| ||| || |||| ||||||||||||| || || |||||||||
Sbjct 1117 CAAGGTCGTGAACT-AAAGGAAGCTCCAGCTCCAATTGGGTATCATTGA 1164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48626654296
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5