BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347167
Length=687
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27920.1 | Symbols: GL1, ATMYB0, ATGL1, MYB0 | myb domain pr... 1164 0.0
> AT3G27920.1 | Symbols: GL1, ATMYB0, ATGL1, MYB0 | myb domain
protein 0 | chr3:10361945-10363506 REVERSE LENGTH=687
Length=687
Score = 1164 bits (630), Expect = 0.0
Identities = 668/687 (97%), Gaps = 0/687 (0%)
Strand=Plus/Plus
Query 1 ATGAGAATAAGGAGAAGAGAGGAAAAAGAGAATCAAGAATACAAGAAAGGTTTATGGACT 60
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGAATAAGGAGAAGAGATGAAAAAGAGAATCAAGAATACAAGAAAGGTTTATGGACA 60
Query 61 GTTGAAGAAGACAACATCCTTATGGACTATGTTCTTAATCATGGCACTGGCCAATGGAAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTGAAGAAGACAACATCCTTATGGACTATGTTCTTAATCATGGCACTGGCCAATGGAAC 120
Query 121 CGCATCGTCAGAAAAACTGGGCTAAAGAGATGTGGGAAAAGTTGTAGACTGAGATGGATG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGCATCGTCAGAAAAACTGGGCTAAAGAGATGTGGGAAAAGTTGTAGACTGAGATGGATG 180
Query 181 AATTATTTGAGCCCTAATGTGAATAAAGGCAATTTCACTGAACAAGAAGAAGACCTCATT 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 AATTATTTGAGCCCTAATGTGAACAAAGGCAATTTCACTGAACAAGAAGAAGACCTCATT 240
Query 241 ATTCGTCTCCACAAGCTCCTTGGCAATAGATGGTCTTTAATAGCCAAAAGAGTGCCGGGA 300
|||||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||
Sbjct 241 ATTCGTCTCCACAAGCTCCTCGGCAATAGATGGTCTTTGATAGCTAAAAGAGTACCGGGA 300
Query 301 AGAACAGATAACCAAGTCAAGAACTACTGGAACACTCATCTCAGCAAAAAACTCGTCGGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGAACAGATAACCAAGTCAAGAACTACTGGAACACTCATCTCAGCAAAAAACTCGTCGGA 360
Query 361 GATTACTCCTCCGCCGTCAAAACCACCGGAGAAGACGACGACTCTCTGCCGTCATTGTTC 420
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 GATTACTCCTCCGCCGTCAAAACCACCGGAGAAGACGACGACTCTCCACCGTCATTGTTC 420
Query 421 ATCACTGCCGCCACAACTTCTTCTCGTCATCATCAACAAGAAAATGTCTACGAGAATATA 480
||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 421 ATCACTGCCGCCACACCTTCTTCTTGTCATCATCAACAAGAAAATATCTACGAGAATATA 480
Query 481 GCCAAGAGCTTTGACGGCGTCGTATCAGCTTCGTACGAGGATAAACCAAAACAAGAACTG 540
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCCAAGAGCTTTAACGGCGTCGTATCAGCTTCGTACGAGGATAAACCAAAACAAGAACTG 540
Query 541 GCTCACAACGATGTCTTAATGGCAACTACTAATGATCCAAGTCACTATTATGGCAATAAC 600
||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCTCAAAAAGATGTCCTAATGGCAACTACTAATGATCCAAGTCACTATTATGGCAATAAC 600
Query 601 GCTTTATGGGTTCATGACGACGATTTTGAGCTGAGTTCACTCGTAATGATGAATTTTGCT 660
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 GCTTTATGGGTTCATGACGACGATTTTGAGCTTAGTTCACTCGTAATGATGAATTTTGCT 660
Query 661 TCTGGTGATATTGAGTACTGCCTCTAG 687
||||||||| ||||||||||||| |||
Sbjct 661 TCTGGTGATGTTGAGTACTGCCTTTAG 687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33255005314
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5