BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347189
Length=558
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28210.1 | Symbols: PMZ, SAP12 | zinc finger (AN1-like) fami... 822 0.0
> AT3G28210.1 | Symbols: PMZ, SAP12 | zinc finger (AN1-like) family
protein | chr3:10520509-10521532 FORWARD LENGTH=946
Length=946
Score = 822 bits (445), Expect = 0.0
Identities = 518/554 (94%), Gaps = 2/554 (0%)
Strand=Plus/Plus
Query 6 AGGAGGAACAGAAGCGTTTCCTGATCTTGGAGAGCATTGCCAAAACCCTGATTGCAAATT 65
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 85 AGGAGGAACAGAAGCGTTTCCTGATCTTGGAGAGCATTGCCAAGACCCTGATTGCAAATT 144
Query 66 ACTCGATTTTCTCCCTTTTACTTGTGACGGCTGCAAATTGGTGTTTTGTTTGGAGCATAG 125
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 145 ACTCGATTTTCTCCCTTTTACTTGCGACGGCTGCAAATTGGTGTTTTGTTTGGAGCATAG 204
Query 126 ATCATACAAGTCACATAATTGTCCGAAATCCGATCACGGAAGCAGAACAGTTTCCATCTG 185
|||||||||||||||||| ||||||||||||||||| || |||||||| |||||||||||
Sbjct 205 ATCATACAAGTCACATAACTGTCCGAAATCCGATCATGGGAGCAGAACGGTTTCCATCTG 264
Query 186 TGAAACATGTTCTATAGCTATCGAAACAACTGGTTTTGGTGAAGAAGGAATCAAATCTTT 245
|||||||||||| ||||| || |||||||||||||||| |||| ||||||||||||||||
Sbjct 265 TGAAACATGTTCAATAGCGATTGAAACAACTGGTTTTGATGAAAAAGGAATCAAATCTTT 324
Query 246 GCTTGAGAAACACGAAAGATCCGGAGATTGTGACCCGAACAAGAAAAAGAAACCAATATG 305
||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||
Sbjct 325 GCTTGAGAAACACGAAAGATCCGGAGATTGTGATCCAAACAAGAAAAAGAAACCAACGTG 384
Query 306 TCCTGTAAAACGTTGCAAAGAGATTCTGACTTTTGCAAATAACCTTACTTGCAAAGATTG 365
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 385 TCCTGTAAAACGTTGCAAAGAGATTCTGACTTTTGCGAATAACCTTACTTGCAAATATTG 444
Query 366 TGGAATCAAGTTCTGTTTAAAACACCGGTTTCCGACAGATCATGTTTGTAACAAGAAAAC 425
|||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 445 TGGAGTCAAGTTCTGTTTGAAACACCGGTTTCCGACAGATCATGTCTGTAACAAGAAGAT 504
Query 426 CAT-AACTACCGCAAGAACAAGCTCGCGGTGGAACGAGAGGTTTATGGAAGCTTTAAGTT 484
||| || |||||| ||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 505 CATTAA-TACCGCGGGAACAAGCTCGAGGTGGAACGAGAGGTTTATGGAAGCTTTGAGTT 563
Query 485 TGAGAAATGAGAAAGGCTGTGGAAGAGGAAGCTCTGTTTCATCAAGATCTCCACCATCAG 544
| ||||| ||||||| ||||||||||| |||||||||||||||| |||| |||||||||
Sbjct 564 TAAGAAACCAGAAAGGGTGTGGAAGAGGGAGCTCTGTTTCATCAAAATCTTCACCATCAG 623
Query 545 TTAGATCCTTTTAG 558
||||||| ||||||
Sbjct 624 TTAGATCGTTTTAG 637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26774800351
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5