BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg347204

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21060.1 | Symbols: ATGRP2B, ATCSP4, GRP2B | glycine-rich pr...   135    3e-31
  AT2G33560.2 | Symbols: BUBR1 | BUB1-related (BUB1: budding unin...   110    2e-23


> AT2G21060.1 | Symbols: ATGRP2B, ATCSP4, GRP2B | glycine-rich 
protein 2B | chr2:9036793-9037650 REVERSE LENGTH=858
Length=858

 Score =  135 bits (73),  Expect = 3e-31
 Identities = 121/144 (84%), Gaps = 3/144 (2%)
 Strand=Plus/Plus

Query  140  GTGGTGACGATCTCTTCGTTCACCAGTC--C-ATTAGCTCTGAAAAATTTCGTAGCCTTG  196
            ||||||||||||||||||||||||||||  | || || ||||||  |||||||||||| |
Sbjct  169  GTGGTGACGATCTCTTCGTTCACCAGTCTTCCATCAGATCTGAAGGATTTCGTAGCCTCG  228

Query  197  CCGTTGATGAAGCTGTTGAGTTCAAGGTTGAGGTTGACAACGCCAGTCGTCTGAAGACTG  256
            | | ||| ||| ||||||||||| | ||||||||||||||| || | ||||  ||| || 
Sbjct  229  CAGCTGAGGAATCTGTTGAGTTCGACGTTGAGGTTGACAACTCCGGCCGTCCCAAGGCTA  288

Query  257  TTGAAGTTTCTGGACCCGAGGGTG  280
            ||||||| ||||||||||| ||||
Sbjct  289  TTGAAGTGTCTGGACCCGACGGTG  312


> AT2G33560.2 | Symbols: BUBR1 | BUB1-related (BUB1: budding uninhibited 
by benzymidazol 1) | chr2:14213633-14215999 REVERSE 
LENGTH=1449
Length=1449

 Score =  110 bits (59),  Expect = 2e-23
 Identities = 64/66 (97%), Gaps = 2/66 (3%)
 Strand=Plus/Plus

Query  64   GCGGAGCATTGCGCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTG-A  122
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  487  GCGGAGCATTGCGCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTGGA  546

Query  123  TAAGAC  128
             |||||
Sbjct  547  -AAGAC  551



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23308644208


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5