BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347207
Length=537
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66930.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 276 2e-73
AT1G43997.1 | Symbols: | Pseudogene of AT1G40087 | chr1:167040... 82.4 4e-15
> AT5G66930.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF1649
(InterPro:IPR012445); Has 247 Blast hits to 247 proteins in
111 species: Archae - 0; Bacteria - 0; Metazoa - 89; Fungi -
83; Plants - 58; Viruses - 0; Other Eukaryotes - 17 (source:
NCBI BLink). | chr5:26725839-26727752 FORWARD LENGTH=959
Length=959
Score = 276 bits (149), Expect = 2e-73
Identities = 171/182 (94%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 31 ATTCTACATACCATTGTCTTTCATCGTGCGCTTGGTCTTATCTGCCCTAAAGATATTGAT 90
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 ATTCTACATACGATTGTCTTTCATCGTGCGCTTGGTCTTATCCGCCCTAAAGATATTGAT 240
Query 91 TTGGAGCTTTTTGAGATCACTTACGTACAATGCAGTGAAATAGAAGTGGAAAATAAAATT 150
||||||||||||||||||||||| ||||||||| ||||||| |||||||| || |||||
Sbjct 241 TTGGAGCTTTTTGAGATCACTTATGTACAATGCGGTGAAATTGAAGTGGAGAAGAAAATC 300
Query 151 GATGAAAAGATTGAGCAATTCATAAACTGGATTGAGAAACACCCAAACAAGAAGAGTCAG 210
||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 301 GATGAAAAGATTGAGCAGTTCATTAACTGGATTGAGAAACACCCAAACAAAAAGAGTCAG 360
Query 211 AT 212
||
Sbjct 361 AT 362
> AT1G43997.1 | Symbols: | Pseudogene of AT1G40087 | chr1:16704096-16704586
REVERSE LENGTH=414
Length=414
Score = 82.4 bits (44), Expect = 4e-15
Identities = 55/60 (92%), Gaps = 1/60 (2%)
Strand=Plus/Plus
Query 277 ATTTACATGGGAATATTACAGAAGAAAATGTCTCAGGAAAGCAAGTGTGGAGAATATCAA 336
||||| ||||||||||||||||||||||||||||| || ||||||||||||| || ||||
Sbjct 5 ATTTAGATGGGAATATTACAGAAGAAAATGTCTCAAGAGAGCAAGTGTGGAGCAT-TCAA 63
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25719883264
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5