BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347231
Length=1461
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28670.1 | Symbols: | oxidoreductase, zinc-binding dehydrog... 2169 0.0
> AT3G28670.1 | Symbols: | oxidoreductase, zinc-binding dehydrogenase
family protein | chr3:10743823-10747163 FORWARD LENGTH=1827
Length=1827
Score = 2169 bits (1174), Expect = 0.0
Identities = 1380/1478 (93%), Gaps = 19/1478 (1%)
Strand=Plus/Plus
Query 1 ATGGTTAAAGCAGTGGTTGGTGAAGATACTAGACTTACTTCTGTTGAAGATCGTCTCTCT 60
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 172 ATGGTGAAAGCAGTGGTTGGAGAAGATACTAGACTTACTTCTGTTGAAGATCGTCTCTCT 231
Query 61 CACTCAGCTATTCCTGCTGAGGTGGGTCTTGTGATAGGAAAGCTTAGCTCTGTTCTGGAT 120
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 232 CACTCAGCTATTCCTGCTGAAGTGGGTCTTGTGATAGGGAAGCTTAGCTCTGTTCTGGAT 291
Query 121 CGTGGATTTTTGTTTGATTTGATTCCCACACCGAGTAACGATGATGGAGAACCAGCTTCC 180
||||||||| | |||||||||||||| ||||| |||||||||||||| |||||||| | |
Sbjct 292 CGTGGATTTGTCTTTGATTTGATTCCTACACCAAGTAACGATGATGGTGAACCAGCATGC 351
Query 181 TCGGTTTTGGAGACCAAAGATGTTAAAAGGAAG-C--C--A-TCT--A----AGTCATCT 228
||||||||||||||||||||| |||||||||| | | | ||| | ||||||||
Sbjct 352 GCGGTTTTGGAGACCAAAGATGATAAAAGGAAGCCTTCTAAGTCTAAATCTCAGTCATCT 411
Query 229 GAGTCGTCTTCTTTATCAATTGATTCCGATTGGGTTGCAGAACATGCCCGACAGGTATCG 288
||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 412 GAGTCGTCTTCTTTATCGATTGATTCAGATTGGGTTGCAGAACATGCTCGACAGGTATCG 471
Query 289 AGAATGTTGTTGGGTGGGATGAAGGTTGTTGGTATCTATGTATGGGCTAGTGACACTT-C 347
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||| || |
Sbjct 472 AGAATGCTGTTGGGTGGCATGAAGGTTGTTGGTATCTATGTATGGGCTAGTGACA-TTGC 530
Query 348 TTTTAAGAATTCTACTATGATTCTCTGCCAGGCTATAAAGGCAGTTTCAGATGCAATACG 407
||||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||||
Sbjct 531 TTTTAAGAATTCTACTATGATCCTTTGCCAGGCTATGAAGGCAGTTTCGGATGCAATACG 590
Query 408 ACATTTGGACCCTAGCTTGAATGAAGCTCTTCTTATTCACATATGTTACAGTCCGAGGAG 467
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 ACATTTGGATCCTAGCTTGAATGAAGCTCTTCTTATTCACATATGTTACAGTCCGAGGAG 650
Query 468 ATGGAATTGCCGAACTTGTTTGTTGAGCTCAAGTATTACATCAAGTAGTCTTCGACCTTG 527
|||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||
Sbjct 651 ATGGAATTGCCGAACTTGTTTGCTGAGTTCAAGTATTACATCAAGTAATCTTCGACCTTG 710
Query 528 TGACTTTAAGCTGGGAAAGGTATTAAGTTCTCTACAGAGGTTTAGGTGCAGCTACAGCTT 587
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 711 TGACTTTAAGCTGGGAAAGGTGTTAAGTTCTCTACAGAGGTTTAGGTGCAGCTACAACTT 770
Query 588 TAATTTCAGATTACCAATTTACGGTGAGGGTGGGTCAAGTGCACAAACATTTACTGATAC 647
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 771 TAGTTTCAGATTACCAATTTACGGTGAGGGTGGGTCAAGTGCACAAACGTTTACTGATAC 830
Query 648 CCTCCGTAAAGAACTTGCAGTTCATGCAAAAGAGCTGAATAGTGCAAATGCAATGATTGA 707
| ||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||
Sbjct 831 CATCCGTAAAGAACTTGCAATTCATGCAAAGGAGCTAAATAGTGCAAATGCAATGATTGA 890
Query 708 TGGAGACTTGGTGCATAACGACGAGCCTTGTAACACGGATGGCGAACATGAAATCGAATT 767
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 891 TGGAGACTTGGTGCATAACGACGAGCCTTGTAACACGGATGGTGAACATGAAATTGAATT 950
Query 768 GTTATTTCCATTCATGAAAGATAGTCGGGCTGAGGCATCAACTGCAAAGAATGTTACTGG 827
|||||| |||||||||||||||| ||| ||||||||||||||||||||||| ||||||||
Sbjct 951 GTTATTCCCATTCATGAAAGATACTCGTGCTGAGGCATCAACTGCAAAGAACGTTACTGG 1010
Query 828 AATTTTACTCTTCAGTGGTTCTGTATTCTCTTACGCCTACTTGAACGTGAAAGAACCAGT 887
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 AATTCTACTCTTCACTGGTTCTGTATTCTCTTACGCCTACTTGAACGTGAAAGAACCAGT 1070
Query 888 TTCACAAGCTATTGCTGATATTAAGGCTGACATTATTAGGAGTCTGCAAAGTAGATTGGA 947
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1071 TTCACAAGCTATTGCTGATATTAAGGCTGACATTATTAGAAGTCTGCAAAGTAGATTGGA 1130
Query 948 CATTATCTGTGATGAGTCCGAGCAGGATCTCAATCCAACTGACGTTGGAGACAATGGTGA 1007
|||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
Sbjct 1131 CATTATCTGTGATGAGTCCGAGCAGGATCTCAATCCAACTGATGTGGGAGACAATGAAAA 1190
Query 1008 TGCAGATGAGATGTCGAAAATTCCCATTTCCAAACTCATCCTGAATTCATCTACAAAAGC 1067
|||||| | |||||||||||||||||| |||||||| ||||| |||||||||| ||||||
Sbjct 1191 TGCAGACGGGATGTCGAAAATTCCCATCTCCAAACTTATCCTCAATTCATCTATAAAAGC 1250
Query 1068 ATGTCATCTCCGTCTCCCCAGGAGAGTTCTTGTTCCGTGGCTGGCGGGTATGAACATCTG 1127
|| ||||||||||| ||||||||||||||||||||||||||| | |||||| ||||||
Sbjct 1251 GTGCCATCTCCGTCTTCCCAGGAGAGTTCTTGTTCCGTGGCTGTCCGGTATGTTCATCTG 1310
Query 1128 CGATTATCTACAGCCATTCGAATCACTCGAGGTGGTAAAAGAACGGTGTA-CTGAGTTAA 1186
||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 1311 CGATTATCTACAGCCGTTCGAATCACTCGAGGTGGTAAAAGAACGGTGTATC-GAGTTGA 1369
Query 1187 TGTCCATGGAACATTCTTCTATCGACGCATCAAAGATATCAGAAGTGGAAACCGAAACAT 1246
|||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||| |
Sbjct 1370 TGTCCATGGAACATTCTTCTATAGACGAATCAAAGATTTCAGAAGTGGAAACCGAAACGT 1429
Query 1247 CTTTATTGATCGCGGAATCAATGTGGGACGTGATATCTCCTGCGACTTCAGCTTCCAGCT 1306
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1430 CTTTATTGATCGCGGAATCAATGTGGGACGTGATATCTCCTGCGACATCTGCTTCCAGCT 1489
Query 1307 TTTACCTAGGAGGGAATGTGGAAAGGACAA-GG--GGTGAAGATGAAAGCAAGAGAACGA 1363
| | |||||||||||||||||||||||||| || |||||||| |||| |||||||||||
Sbjct 1490 TCTGCCTAGGAGGGAATGTGGAAAGGACAACGGATGGTGAAGACGAAACCAAGAGAACGA 1549
Query 1364 GTAACACAAGTACTACATCTAATGTCCCGATGTTGGTCGGGATTTTCGTGCTTTTACTCT 1423
||||| |||||||| |||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1550 GTAACGCAAGTACTGCATCAAATGTCCCGATTTTGGTCGGGATTTTCGTACTTTTACTCT 1609
Query 1424 CGATTGTATTAGGATTCATGCTTTACCAGAGCGATTAG 1461
| ||||||||||||||||||||||||||||||||||||
Sbjct 1610 CAATTGTATTAGGATTCATGCTTTACCAGAGCGATTAG 1647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72037782075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5