BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347270
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28960.1 | Symbols: | Transmembrane amino acid transporter ... 1873 0.0
> AT3G28960.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr3:10984245-10985767 REVERSE LENGTH=1218
Length=1218
Score = 1873 bits (1014), Expect = 0.0
Identities = 1151/1219 (94%), Gaps = 2/1219 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGAAGATAACCAAGAAAGACAACGTGACAATGTTGGAACTTCATCTTTCTTCAAG 60
||||| |||||||||||||||| ||||||||||||||| ||| ||||||||||||| ||
Sbjct 1 ATGGAAGAAGATAACCAAGAAATACAACGTGACAATGTCGGATCTTCATCTTTCTTTAAA 60
Query 61 ACTTGTTTCAACGCACTCAATGCTCTTTCAGGAATTGGAATATTATCGGTACCATACTCA 120
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 ACATGTTTCAACGCACTCAATGCTCTTTCAGGAATTGGAATATTATCGGTACCATATTCA 120
Query 121 CTTGCTCGTGGAGGATGGTTGAGTCTTTCACTTCTGTTACTCCTAGCCGCAACCGCCTTC 180
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 121 CTTGCTCGTGGAGGATGGTTGAGTCTTTCACTTTTGTTACTCCTAGCCGTAACCGCCTTC 180
Query 181 TACACATCCTTACTCATTACAAAATGTATGAATGCGGACCGCAACATCAAAACATATCCC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TACACATCCTTACTCATTACAAAATGTATGAATGCGGACCGCAACATCAAAACATATCCC 240
Query 241 GACATTGGAGAAAGAGCATTTGGTAGACCAGGAAGAATCATTGTGTCACTCTTCATGCAC 300
||||| |||||| | |||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 241 GACATAGGAGAACGCGCATTTGGTAGACCGGGAAGAATCATTGTGTCAGTCTTCATGCAC 300
Query 301 CTAGAACTCTATCTAGTCACCACAGGTTTCTTGATCCTCGAGGGGGACAATCTTCACAAT 360
||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 301 CTAGAGCTCTATCTAGTCACCACGGGTTTCTTGATCCTCGAGGGCGACAATCTTCACAAT 360
Query 361 CTTTTCCCGGGTTTTAACATCGAACTAATTGGATTGAGATTGAATGGCAAACAAGCTTTC 420
|||||||||||||||| ||||||| | || ||||||||||||||||||||||||||||||
Sbjct 361 CTTTTCCCGGGTTTTACCATCGAAATGATCGGATTGAGATTGAATGGCAAACAAGCTTTC 420
Query 421 ATGGCGACTGTTGCCCTCGTCATCATGCCAACTCTATGGTGGGATAATCTAAGCGTTTTG 480
|||||||| || ||| | ||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 421 ATGGCGACCGTCGCCTTTGTCATTATGCCAACTCTATGGTGGGATAATCTCAGCGTCTTG 480
Query 481 TCTTATGTTTCTATGAGTGGCGTTTTAGCTACGACTGTGACTCTTGGATCAATATCTTGG 540
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 TCGTATGTTTCTATGAGTGGCGTTTTAGCTACGACTGTGACGCTTGGATCAATATCTTGG 540
Query 541 GTTGGCGCATTCGATGGAATTGGGTTTCATCAAAAGGGAAAGTTGATAAATTGGAGTGGG 600
|||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 ATTGGCGCATTTGATGGGATTGGGTTTCATCAAAAAGGAAAGTTGATAAATTGGAGTGGG 600
Query 601 ATCCCTACAGCTTTGAGCTTATATGCTTTTTGCTATGGTGCGCATCCAGTTTTGCCCACT 660
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATCCCTACTGCTTTGAGCTTATATGCTTTTTGCTATGGTGCGCATCCAGTTTTGCCCACT 660
Query 661 TTGTATTCCTCTATGAAAAGCAAACATCAGTTCAACAATGTTCTACTAATATGTTTTATA 720
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 TTGTATTCTTCTATGAAAAGCAAACATCAGTTCAACAATGTCCTACTAATATGTTTTATA 720
Query 721 CTATGCACTATAGGATACACATCAATGGCGGTATTGGGCTACTTAATGTATGGATCACAA 780
||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 721 TTATGCACCATAGGATACACATCAATGGCAGTTTTGGGCTACTTAATGTATGGATCACAA 780
Query 781 ACATTATCACAAATAACACTGAATCTTCCAATTCATAAGACGAGTTCAAAGGTGGCAATA 840
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 781 ACATTATCACAAATAACACTGAATCTTCCAATTCATAAGACGAGTTCGAAGGTGGCAATA 840
Query 841 TACACAACCCTTGTAAACCCGGTAGCCAAATACGCATTGATGATCACACCAACCGTGAAC 900
|||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 841 TACACAACTCTCGTAAACCCGGTAGCCAAATACGCACTGATGATCACACCAACCGTGAAC 900
Query 901 ACCATAAAAGATTGGTTTCCTTCACGTTA-TGCCAAAAAGACTTACTTACATCTCTTGAT 959
|| ||||||||||||||||||||||| || | |||||||| | |||||||||||||||||
Sbjct 901 ACTATAAAAGATTGGTTTCCTTCACGGTACT-CCAAAAAGGCATACTTACATCTCTTGAT 959
Query 960 AAGCACATTTTTCATCATAAGTAGTGTCGTCATCGCCGAGACACTTCCCTTTTTCGGTTA 1019
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 960 AAGCACATTTTTCATCATAAGTAGTGTCGTGATCGCCGAGACACTTCCCTTTTTTGGTTA 1019
Query 1020 TATGATGTCGCTGGTTGGAGCATTACTGAGCGTAACGGTTTCTATACTTCTGCCTTGTTT 1079
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1020 TATGATGTCGCTGGTTGGAGCATTATTGAGCGTTACGGTTTCTATACTTCTGCCTTGTTT 1079
Query 1080 ATGTTACTTGAAGATCTATGGATATTACAAGAAAATTGGATGTGAGACTATTATGTTGTT 1139
||||||||||||||||| |||| | |||||||||||||| ||||||||||| ||||||||
Sbjct 1080 ATGTTACTTGAAGATCTTTGGAAACTACAAGAAAATTGGGTGTGAGACTATAATGTTGTT 1139
Query 1140 TGGAATGGTAGTGATGAGTGTTTTTGTTGGAGTTTTAGGTACTTACATTGCAATCCGAGA 1199
|||||||||||||||||||||||||||||| || ||||||||||||||||| | |||||
Sbjct 1140 TGGAATGGTAGTGATGAGTGTTTTTGTTGGGGTAATAGGTACTTACATTGCACTTCGAGA 1199
Query 1200 AATAATTGGAAGTGTATAA 1218
|||||||| |||||||||
Sbjct 1200 TATAATTGGTAGTGTATAA 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839049640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5