BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347271
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
AT3G28970.1 | Symbols: AAR3 | Domain of unknown function (DUF29... 989 0.0
> AT3G28970.1 | Symbols: AAR3 | Domain of unknown function (DUF298)
| chr3:10987787-10989921 REVERSE LENGTH=1210
Length=1210
Score = 989 bits (535), Expect = 0.0
Identities = 613/650 (94%), Gaps = 8/650 (1%)
Strand=Plus/Plus
Query 198 GGTGGACTTTTCCGAGTTTACTTGCTTTTACGATTTTGTTTTCTTTATGTGCCGCGAGAA 257
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 GGTGGACTTTACGGAGTTTACTTGCTTTTACGATTTTGTTTTCTTTATGTGCCGCGAGAA 438
Query 258 TGGACAAAAGAATATAACTATAAGTAGAGCTATTACCGCATGGAAACTTGTTTTGGCTGG 317
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 439 TGGGCAAAAGAATATAACTATAAGTAGAGCTATTACTGCATGGAAACTTGTTTTGGCTGG 498
Query 318 GAGATTTAGGTTACTTAACCGCTGGTGTGACTTTATCGAGAAAAATCAACGGCACAATAT 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 GAGATTTAGGTTACTTAACCGCTGGTGTGACTTTATCGAGAAAAATCAACGGCACAATAT 558
Query 378 TTCAGAAGATACTTGGCAACAAGTCTTGGCTTTTAGTCGTTGTGTACATGAGAATCTAGA 437
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 559 TTCAGAAGATACTTGGCAACAAGTCTTGGCGTTTAGTCGTTGTGTACATGAGAATCTAGA 618
Query 438 AGGATACGACTCTGAAGGTGCATGGCCTGTCCTAATCGATGATTTTGTCGAGCATATGTA 497
|||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 619 AGGATATGACTCTGAAGGTGCATGGCCTGTCCTAATAGATGACTTTGTCGAGCATATGTA 678
Query 498 CAGCATTTTAGGACCGAATAAGGACACTAGCTTGTTCTGCAAATGTGGTGACACCGAATC 557
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 679 CAGTATTTTAGGACCGAATAAGGACACTAGCTTGTTCTGCAAATGTGGTGACACAGAATC 738
Query 558 TGAATCATGCCTCTATCAAGAAGATGAGCATCACAAAGATTATCGCCGCCCCCACACAGG 617
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 739 TGAATCATGCCTCTATCAAGAAGATGAGCATCACAAAGATTATCGCCGCCCACACACGGG 798
Query 618 TTTAAGAAACATTCCAGGTTTAAAGAGAAAAGCATCTAACAACAATGGCGACGAAGAAGA 677
||||||||||||||||||||||||||||||| |||| || || |||| ||| ||||||||
Sbjct 799 TTTAAGAAACATTCCAGGTTTAAAGAGAAAAACATCGAAGAAGAATGACGAAGAAGAAGA 858
Query 678 AGATGAAGA--A-GTA-TC--AGAAACCCAAAACTACT-CTTCTTCGCTAAACTTCAAAC 730
||||||||| | | | | |||||||||||||| || |||||| ||||||||||||||
Sbjct 859 AGATGAAGATGAAGAAGTGTTAGAAACCCAAAACT-CTTCTTCTTTGCTAAACTTCAAAC 917
Query 731 GAATCAAAACCAACGACAGTCCAAGATGTTCATCCAAGTCTCCTTGTGCAATCGAGCGAA 790
|||||||||||| | |||||||||| |||||||| ||||| |||||| ||||||||||||
Sbjct 918 GAATCAAAACCAGCAACAGTCCAAGGTGTTCATCAAAGTCCCCTTGTTCAATCGAGCGAA 977
Query 791 GTCTCTCACAAGGTTTTGCGAGTCTTTTATCGACTGGAGATAAGCCATGA 840
|||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 978 GTCTTTCACAAGGTTTTGCGAGTCTTTTATCGACTGGAGATAAACCATGA 1027
Score = 228 bits (123), Expect = 8e-59
Identities = 148/160 (93%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 4 TGTGATCATAATAAACCCGGTGACGGCGAAGAATCACAAAGATTTAACTTATCTAAAGAA 63
|||| | |||| |||||| |||| ||||||||||| |||||||||||||| |||||||||
Sbjct 222 TGTG-TAATAAGAAACCCTGTGATGGCGAAGAATCTCAAAGATTTAACTTGTCTAAAGAA 280
Query 64 GCATTAGCTCAGCTTTTATATCTAGTAGAGCATAAGTTTCAAGCTAGGAACTCGATTTTT 123
||| || ||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 281 GCAATAACTCAGCTCTTATATCTAGTAGAGAATAAGTTTCAAGCTAGGAACTCGATTTTT 340
Query 124 GATGAATTGTTCAAGTTGATGTCACGGCTAGACTTAATGG 163
||||||||||| ||||||||||||||||||||||||||||
Sbjct 341 GATGAATTGTTTAAGTTGATGTCACGGCTAGACTTAATGG 380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40940829805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5