BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg347288

Length=675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G33720.1 | Symbols:  | AP2/B3-like transcriptional factor fa...   320    1e-86


> AT2G33720.1 | Symbols:  | AP2/B3-like transcriptional factor 
family protein | chr2:14263732-14265202 FORWARD LENGTH=1238
Length=1238

 Score =  320 bits (173),  Expect = 1e-86
 Identities = 272/318 (86%), Gaps = 14/318 (4%)
 Strand=Plus/Plus

Query  1    ATGAAGATGCCT-CT--CTTTTCTGCATTGAAAACTCAACAATACTTG-TCTACGAC--G  54
            |||||||||||| ||  ||||||||| | ||| |||   ||||||||| || |||||  |
Sbjct  45   ATGAAGATGCCTCCTCCCTTTTCTGCGTCGAAGACT---CAATACTTGTTCCACGACGAG  101

Query  55   TCATCAGAAAACCCTAAAAAGTGTTTGGTCTCCACGACTCTCTGTTTGTCGTCTTGTGAA  114
            ||||| |||||| |||||||| ||||||||||||| ||||| | ||||||||||||||||
Sbjct  102  TCATCGGAAAACTCTAAAAAGAGTTTGGTCTCCACAACTCTTTCTTTGTCGTCTTGTGAA  161

Query  115  AACCCTAATAAGAGGAAGATGAACACTAATGATGATCCCAAGGTTTCTTGCAGACCAAGC  174
            |||||||||||||||||||||||| || | || | || |||  ||||||||| |||||| 
Sbjct  162  AACCCTAATAAGAGGAAGATGAACTCTGACGAAGTTCTCAATATTTCTTGCATACCAAGA  221

Query  175  GACGAAAAATCAAC-CAATGAAGAAAGAAAGATTAAACGAATGAGGAACCTCTCGAA-CG  232
            ||| | |||| ||| ||| | |||||||||||||  |||||||||||| |||||| | | 
Sbjct  222  GACTACAAATTAACACAA-GTAGAAAGAAAGATTGCACGAATGAGGAATCTCTCGTATC-  279

Query  233  AAGAAAAGGCAGAGGAAGAATGGTACGGTGTTTCAACAGAACTAACACTCTTCAAAGATC  292
            |||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct  280  AAGAAAAGGCAGAGGACGAATGGTACGGTGTCTCAACAGAACTAACACTCTTCAAGGATC  339

Query  293  CATGGATCATCAAGAAAG  310
            | ||||||||||| ||||
Sbjct  340  CGTGGATCATCAA-AAAG  356



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32652195550


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5