BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347293
Length=474
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18930.1 | Symbols: | unknown protein; Has 3 Blast hits to ... 244 4e-64
> AT2G18930.1 | Symbols: | unknown protein; Has 3 Blast hits to
3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:8198778-8199072 FORWARD LENGTH=228
Length=228
Score = 244 bits (132), Expect = 4e-64
Identities = 183/208 (88%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 56 TGGGAGAGCCATCAAACAAGTGGCAGGAAAGCAGTAGATGGGATGGCCATTTACATGACA 115
||||||||||| ||||||||||| | ||||||| |||||||| || ||||| ||||| ||
Sbjct 2 TGGGAGAGCCACCAAACAAGTGGAATGAAAGCAATAGATGGGTTGACCATTCACATGTCA 61
Query 116 CTGAGCAGGTCGAGACCTTGCCGGAAG-AAAGCAGTAGATCGGTTGATGCAAATGTAGAG 174
||||| ||||||||| ||||||| || ||| ||||| ||||| |||||||||| | |||
Sbjct 62 CTGAGGTGGTCGAGACTTTGCCGG-AGAAAACCAGTAAATCGGCTGATGCAAATCTGGAG 120
Query 175 TCCTCGGATAAAAATCACAATGAAGCGAATGAAGAGGAGGGAGCGAATGAAACGGTGGGA 234
|||| |||| |||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 121 TCCTTGGATGAAAATCACAAGGAAGCGAATGAAGAGGAGGGAGCGAATGAAACGATGGGA 180
Query 235 GCGAATGAAGAAGATGGAGCGAATGAAA 262
| ||||||| |||| |||||||||||||
Sbjct 181 GTGAATGAACAAGAGGGAGCGAATGAAA 208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22555132003
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5