BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347295
Length=1890
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2730 0.0
> AT3G29230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:11188803-11190605 FORWARD LENGTH=1803
Length=1803
Score = 2730 bits (1478), Expect = 0.0
Identities = 1679/1779 (94%), Gaps = 2/1779 (0%)
Strand=Plus/Plus
Query 1 ATGACGTCATCACTACCAGTTCGAGCTCCGTCATGGGTTTCTTCCCGGAGAATCTTCGAA 60
||||||||||||||||| ||||||||||| || ||||| |||||||||||||| ||||||
Sbjct 1 ATGACGTCATCACTACCTGTTCGAGCTCCTTCCTGGGTCTCTTCCCGGAGAATTTTCGAA 60
Query 61 GAGAGACTTCAAGATCTTCCCAAATGCGCCAATTTAAACCAAGTGAAGCAACTTCACGCC 120
|||||||| ||||| |||||||||||||| ||| ||||||||||||| || ||||||||
Sbjct 61 GAGAGACTCCAAGACCTTCCCAAATGCGCTAATCTAAACCAAGTGAAACAGCTTCACGCT 120
Query 121 CAGATAATTCGACGGAATCTTCATCAAGATCTACACATAGCACCAAAGCTAATCTCTGCT 180
|||||||| ||||| || |||||| ||||||||||||||||||| |||||||||||||||
Sbjct 121 CAGATAATCCGACGAAACCTTCATGAAGATCTACACATAGCACCGAAGCTAATCTCTGCT 180
Query 181 CTTTCTCTCTGTCGTCAAACGAATTTAGCTCTTAGGGTTTTTAATCAGGTTCAAGAACCA 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 CTTTCTCTCTGTCGTCAAACGAATTTAGCTGTTAGGGTTTTTAATCAGGTTCAAGAACCA 240
Query 241 AATGTTCATCTTTGTAATTCTCTGATTAGAGCTCATGCGTTGAACTCGCAGCCTTATCAA 300
|||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 241 AATGTTCATCTTTGCAATTCTCTGATTAGAGCTCATGCCCAGAACTCTCAGCCTTATCAA 300
Query 301 GCTTTCTTCGTTTTCTCAGAGATGCAAAGATTTGGTCTTTTTGCTGATAATTTCACTTAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTTTCTTCGTTTTCTCAGAGATGCAAAGATTTGGTCTTTTTGCTGATAATTTCACTTAC 360
Query 361 CCGTTTCTTCTTAAAGCTTGTTCGGGTCTATCATGGTTACCTGTGGTGAAGATGATGCAT 420
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 361 CCGTTTCTTCTTAAAGCTTGTTCTGGTCAATCATGGTTACCTGTGGTGAAGATGATGCAT 420
Query 421 AATCATATCGAAAAATTGGGGCTTTCGTCGGATATTTATGTTCCAAATGCTCTCATTGAT 480
|||||||| ||||||||||||||||| || ||||||||||| || |||||||||||||||
Sbjct 421 AATCATATAGAAAAATTGGGGCTTTCTTCTGATATTTATGTACCCAATGCTCTCATTGAT 480
Query 481 TGTTATTCTAGATGTGGTGGTTTGGGTGTTAGAGATGCTATGAAGTTGTTTGAGAAGATG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGTTATTCTAGATGTGGTGGTTTGGGTGTTAGAGATGCTATGAAGTTGTTTGAGAAGATG 540
Query 541 AGTGAGAGAGATACTGTGTCTTGGAATTCGATGCTTGGTGGGTTAGTGAAAGCTGGGGAA 600
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGTGAAAGAGATACTGTGTCTTGGAATTCGATGCTTGGTGGGTTAGTGAAAGCTGGGGAA 600
Query 601 TTGAGAGATGCTCGGAAACTGTTCGATGAAATGCCTCAAAGAGATTTGATTAGTTGGAAT 660
||||||||||| |||| ||||||||||||||||||||| || ||||||||||||||||||
Sbjct 601 TTGAGAGATGCACGGAGACTGTTCGATGAAATGCCTCAGAGGGATTTGATTAGTTGGAAT 660
Query 661 ACTATGTTGGATGGTTATGCTAGATGTAGAGAGATGAGTACAGCTTTTGAGTTGTTTGAG 720
||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||
Sbjct 661 ACTATGTTGGATGGTTATGCTAGGTGTAGAGAGATGAGTAAAGCGTTTGAGTTGTTTGAG 720
Query 721 AAAATGCCTGAGAGGAATACGGTGTCTTGGTCGACGATGGTTATGGGTTATAGTAAAGCT 780
|| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 721 AAGATGCCTGAGAGAAATACTGTGTCTTGGTCGACGATGGTTATGGGTTATAGTAAAGCT 780
Query 781 GGAGATATGGAAATGGCTAGAGTTATGTTTGATAAGATGCCATTGCCGGCTAAAAATGTG 840
|| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 781 GGGGATATGGAAATGGCTAGAGTTATGTTTGATAAAATGCCATTGCCTGCTAAAAATGTT 840
Query 841 GTCACTTGGACGATTATTATTGCTGGATATGCGGAGAAGGGGCTTTTGAAGGAGGCTGAT 900
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 841 GTCACTTGGACGATAATTATTGCTGGGTATGCGGAGAAGGGGCTTTTGAAGGAGGCTGAT 900
Query 901 AGATTAGTCAACCAAATGGTGGCTTCAGGATTGAGATTTGATGCTGCTGCTGCT-ATTAG 959
|||||||| |||||||||||||||||||||||| |||||||||||| |||| | |||||
Sbjct 901 AGATTAGTTGACCAAATGGTGGCTTCAGGATTGAAATTTGATGCTGCGGCTG-TGATTAG 959
Query 960 TATCTTGGCTGCTTGTGCCGAGTCTGGTCTGCTTAGTTTAGGAATGAGGGTTCATTCCAT 1019
|||||||||||||||| | ||||||||| |||| ||||||||||||||| |||| |||||
Sbjct 960 TATCTTGGCTGCTTGTACTGAGTCTGGTTTGCTCAGTTTAGGAATGAGGATTCACTCCAT 1019
Query 1020 AATAAAAAAGTCTAACCTCAATTCGAATGCTTCTGTGTTAAATGCACTACTTGATATGTA 1079
| | |||| |||||| ||| ||||||||||| |||||| ||||||||||||||||||||
Sbjct 1020 ACTGAAAAGGTCTAATCTCGGTTCGAATGCTTATGTGTTGAATGCACTACTTGATATGTA 1079
Query 1080 TGCGAAATGTGGTAGCCTaaaaaaaGCGTTTGATGTGTTTAACAACATGCCCAAGAAGGA 1139
||| |||||||||| |||||| ||||||||||||||||||||| | || |||||||||||
Sbjct 1080 TGCAAAATGTGGTAACCTAAAGAAAGCGTTTGATGTGTTTAACGATATACCCAAGAAGGA 1139
Query 1140 CCTCGTCTCTTGGAACACTATGCTTCATGGTCTTGGTGTTCATGGCCACGGAAAAGAAGC 1199
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1140 TCTCGTGTCTTGGAACACTATGCTTCATGGTCTTGGCGTTCATGGCCACGGAAAGGAAGC 1199
Query 1200 AATTGAGCTTTTTTCGAGAATGAGAAGGGAAGGGATTCGGCCTGATAAAGTCACATTTAT 1259
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1200 AATCGAGCTTTTTTCGAGAATGAGAAGGGAAGGGATTCGGCCTGATAAAGTCACGTTTAT 1259
Query 1260 TGCTGTTTTGTGTTCCTGCAATCACGCGGGTCTCATTGATGAAGGCATAGATTATTTCTA 1319
|||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 1260 TGCTGTTTTGTGTTCCTGTAATCACGCGGGTCTCATTGATGAAGGAATAGATTACTTCTA 1319
Query 1320 CTCGATGGAGAAAGTGTATGATCTTGTTCCACAAGTTGAACACTATGGTTGTCTTGTTGA 1379
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 CTCAATGGAGAAAGTATATGATCTTGTTCCACAAGTTGAACACTATGGTTGTCTTGTTGA 1379
Query 1380 CCTATTAGGTCGAGGAGGGCGGTTAAAGGAAGCGATAAAGGTTGTCCAAACAATGCCTAT 1439
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1380 CCTATTAGGTCGAGTAGGGCGGTTAAAGGAAGCGATAAAGGTTGTCCAAACAATGCCAAT 1439
Query 1440 GGAACCCAATGTTGTTATTTGGGGTGCTCTTCTTGGAGCGTGCAGGATGCATAACGAGGT 1499
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GGAGCCCAATGTTGTTATTTGGGGTGCTCTTCTTGGAGCGTGCAGGATGCATAACGAGGT 1499
Query 1500 GGATATCGCTAAGGAAGTTCTGGATAATCTGGTTAAATTAGACCCTTCTGATCCGGGAAA 1559
|||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1500 GGATATTGCTAAGGAAGTTCTGGATAATCTGGTTAAATTAGACCCTTGTGATCCTGGAAA 1559
Query 1560 CTATACACTGCTGTCAAATATTTATGCAGCAGCAGAGGATTGGGAAGGGGTTGCTGACAT 1619
|||| | || |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1560 CTATTCGCTTCTGTCAAATATTTATGCAGCAGCAGAGGATTGGGAAGGAGTTGCTGACAT 1619
Query 1620 AAGGTCAAAGATGAAGAGCATGGGAGTAGAGAAACCATCTGGAGCTAGTTCGGTTGAATT 1679
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 AAGATCAAAGATGAAGAGTATGGGAGTAGAGAAACCATCTGGAGCTAGTTCGGTTGAATT 1679
Query 1680 GGAGGATGGGATACACGAATTTACAGTTTTTGACAAATCACACCCAAAATCTGATCAAAT 1739
||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1680 GGAGGATGGGATACATGAATTTACAGTGTTCGACAAATCACACCCAAAATCTGATCAAAT 1739
Query 1740 TTATCAGATGCTTGGTAGTTTAATTGAACCTCCAGATCC 1778
||||||||||||||||||||||||||||||||||||||
Sbjct 1740 ATATCAGATGCTTGGTAGTTTAATTGAACCTCCAGATCC 1778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93573815880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5