BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg347303

Length=627
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G27750.1 | Symbols:  | nucleic acid binding | chr1:9657385-9...   318    3e-86
  AT2G20580.1 | Symbols: RPN1A, ATRPN1A | 26S proteasome regulato...   150    1e-35


> AT1G27750.1 | Symbols:  | nucleic acid binding | chr1:9657385-9661958 
FORWARD LENGTH=3476
Length=3476

 Score =  318 bits (172),  Expect = 3e-86
 Identities = 208/225 (92%), Gaps = 3/225 (1%)
 Strand=Plus/Plus

Query  109  CCTGAATCTCAGCCTCCG---CCACCGCAATTAGAATCCCAATCCCCTTCTACGGTGGTT  165
            ||||||||||| ||||||   ||||||||| |||||||||||||||||||||||||||| 
Sbjct  92   CCTGAATCTCACCCTCCGCCACCACCGCAACTAGAATCCCAATCCCCTTCTACGGTGGTA  151

Query  166  AGCTCGTTCCCAGCTCCGGTGACGCCGTCGCCTCCATCTCAGGAGGAAATTCAAACCAGA  225
            ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct  152  AGCTCGTTCCCGGCTCCGGTGACACCGTCGCCTCCATCTCAGGAGGAAATTCAAACGAGA  211

Query  226  AGCAGGAACAGAGAAGAGATTCGAAGAGTGCATGACTGCTATAAGCGTCTCAAATCTTCT  285
            || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct  212  AGTAGGAACAGAGAAGAGATTCGAAGAGTGCATGACTGCTATAAGCGTCTTAAATCTTGT  271

Query  286  ATTGGTCAGAGAGATGGTGGTGGGTGCTCTGCGAATCTTGAGCAA  330
             ||| ||||||||||||||| ||  ||||||||||||||||||||
Sbjct  272  GTTGCTCAGAGAGATGGTGGCGGCCGCTCTGCGAATCTTGAGCAA  316


 Score = 99.0 bits (53),  Expect = 5e-20
 Identities = 53/53 (100%), Gaps = 0/53 (0%)
 Strand=Plus/Plus

Query  30   CTCTGCGAATCTTGAGCAAGCGTATCGCTCCCTCATCTCCGCTTCCAGAGGTT  82
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  298  CTCTGCGAATCTTGAGCAAGCGTATCGCTCCCTCATCTCCGCTTCCAGAGGTT  350


> AT2G20580.1 | Symbols: RPN1A, ATRPN1A | 26S proteasome regulatory 
subunit S2 1A | chr2:8858988-8864865 FORWARD LENGTH=3065
Length=3065

 Score =  150 bits (81),  Expect = 1e-35
 Identities = 95/102 (93%), Gaps = 0/102 (0%)
 Strand=Plus/Plus

Query  402  GTCTGAAGAGGACTTGGAACTAAAGCAGAACCTTGAGCTTTATGTCGAGAGGGTTCAGGA  461
            ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct  340  GTCTGAAGAGGACTTGGAACTAAAGCAGAACCTTGAGCTCTATGTTGAGAGGGTTCAGGA  399

Query  462  TCCCAATCCCGAGTTGCAGAAGGCTGCTCTTGAAAGCATGAG  503
            ||| ||||| || |||||||||||||| ||||| ||||||||
Sbjct  400  TCCTAATCCGGAATTGCAGAAGGCTGCCCTTGAGAGCATGAG  441



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30240956494


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5