BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347316
Length=423
Score E
Sequences producing significant alignments: (Bits) Value
AT3G33528.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 318 2e-86
AT4G07526.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 315 3e-85
> AT3G33528.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT4G07526.3);
Has 57 Blast hits to 57 proteins in 2 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:14082795-14084346
REVERSE LENGTH=765
Length=765
Score = 318 bits (172), Expect = 2e-86
Identities = 298/355 (84%), Gaps = 23/355 (6%)
Strand=Plus/Plus
Query 76 CAAGAATTCTCAGAAGTTCCTGATCTAAGT-AAGTGGTTTTCGAGTTATGTCTATGAATC 134
|||||||||||||||||||||||||||||| || |||| |||||||||| ||||||| ||
Sbjct 415 CAAGAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTATATCTATGAGTC 473
Query 135 GCCGATGCTGGATACAAGTGATGGTCTTGAGTTTTCTTTTCCTGAAGAAAGTAAAGGTAT 194
|||||| ||||||||||||||||||||| |||| |||||| || |||||||||| ||||
Sbjct 474 ACCGATGATGGATACAAGTGATGGTCTTGGGTTTGCTTTTCTTGGAGAAAGTAAAAGTAT 533
Query 195 AAAGGATATGGAATTAGTCTCTTCTCAGGTTAAAGATAAGTCTCAGTCGCAAGTTGCGTT 254
|||||| |||||||||||||||||||| | |||||||| ||||||||| ||| ||| |||
Sbjct 534 AAAGGAAATGGAATTAGTCTCTTCTCACGCTAAAGATATGTCTCAGTCCCAAATTGAGTT 593
Query 255 TTCAGA-GA-AT-ACGGAA----GTCGTTGAGGACAGTGA-AGTAGATGAAGAAAACAAT 306
|||||| || || | | || ||||||||||||||||| | |||||||||| ||||
Sbjct 594 TTCAGAAGATATTATG-AATCTCGTCGTTGAGGACAGTGAGA-TAGATGAAGACAACA-- 649
Query 307 AGTATTTGGGGAAAGCCTAAGA-AAAAGCGCATCAGTACTATTTGGAGAAAACCTATGAG 365
|| |||||||||| ||||||| ||||| | | || | | ||| ||||||||| |||
Sbjct 650 -GTCTTTGGGGAAAACCTAAGAGAAAAG-GTAGCAATG-T-TTTCC-GAAAACCTAAGAG 704
Query 366 AAAGAAAGAGCCTACAACAACAACCTATGAAGCTGAGCTAACTTCCTTGAGGAAC 420
|||| | ||| |||||||||| | |||||||||||||||| || ||||| ||||
Sbjct 705 AAAGGATGAGACTACAACAAC--C-TATGAAGCTGAGCTAAATTACTTGAAGAAC 756
> AT4G07526.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G33528.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:4358652-4360099 REVERSE LENGTH=768
Length=768
Score = 315 bits (170), Expect = 3e-85
Identities = 288/341 (84%), Gaps = 24/341 (7%)
Strand=Plus/Plus
Query 76 CAAGAATTCTCAGAAGTTCCTGATCTAAGT-AAGTGGTTTTCGAGTTATGTCTATGAATC 134
|||||||||||||||||||||||||||||| || |||| |||||||| ||||||||| ||
Sbjct 442 CAAGAATTCTCAGAAGTTCCTGATCTAAGTCAA-TGGTGTTCGAGTTGTGTCTATGAGTC 500
Query 135 GCCGATGCTGGATACAAGTGATGGTCTTGAGTTTTCTTTTCCTGAAGAAAGTAAAGGTAT 194
|||||| |||||||||||||||||||||||||| | |||| || ||||||||||||||
Sbjct 501 ACCGATGATGGATACAAGTGATGGTCTTGAGTTTGCGTTTCTTGGAGAAAGTAAAGGTAG 560
Query 195 AAAGGATATGGAATTAGTCTCTTCTCAGGTTAAAGATAAGTCTCAGTCGCA-AGTTGCGT 253
|||||| |||||||||||||||||||||| ||||| || |||||| ||||| | ||| ||
Sbjct 561 AAAGGAAATGGAATTAGTCTCTTCTCAGGCTAAAGTTATGTCTCATTCGCAGA-TTGAGT 619
Query 254 TTTCAGA-GA-ATACGGAA----GTCGTTGAGGACAGTGA-AGTAGATGAAGAAAACAAT 306
||||||| || ||| ||| ||||||||||||||||| | |||||||||| ||||
Sbjct 620 TTTCAGAAGATATAATGAATCTCGTCGTTGAGGACAGTGAGA-TAGATGAAGACAACA-- 676
Query 307 AGTATTTGGGGAAAGCCTAAGA-AAAAGCGCATCAGTACTATTTGGAGAAAACCTATGAG 365
|| |||||||||| ||||||| ||||| | | || | | ||| || ||| |||| |||
Sbjct 677 -GTCTTTGGGGAAAACCTAAGAGAAAAG-GTAGCAATT-T-TTTCGA-AAA-CCTAAGAG 730
Query 366 AAAGAAAGAGCCTACAACAACAACCTATGAAGCTGAGCTAA 406
|||| ||||| |||||||||| | ||||||||||||||||
Sbjct 731 AAAGGAAGAGACTACAACAAC--C-TATGAAGCTGAGCTAA 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20056831851
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5