BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg347417

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05190.1 | Symbols:  | D-aminoacid aminotransferase-like PLP...   202    2e-51
  AT1G54280.1 | Symbols:  | ATPase E1-E2 type family protein / ha...   113    9e-25
  AT1G17500.1 | Symbols:  | ATPase E1-E2 type family protein / ha...  91.6    4e-18


> AT3G05190.1 | Symbols:  | D-aminoacid aminotransferase-like PLP-dependent 
enzymes superfamily protein | chr3:1471397-1475784 
FORWARD LENGTH=2147
Length=2147

 Score =  202 bits (109),  Expect = 2e-51
 Identities = 122/128 (95%), Gaps = 1/128 (1%)
 Strand=Plus/Plus

Query  134  AGGCTTGGGGGGAATTAGTGTCGATATACAGTGATCTCTGTCACATGGGAACACCACCAG  193
            |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  444  AGGCTT-GGGGGAATTAGTGTCGATATACAGTGATCTCTGTCAGATGGGAACACCACCAG  502

Query  194  CTGTCATCAATGCGGATGAGCTTCAGCGAGATCCCGAGACTACACTACACGGTCTTTGTG  253
            | |||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct  503  CAGTCATCGATGCGGATGAGCTTCAGCGAGATCCCGAGACTACACTTCGCGGTCTTTGTG  562

Query  254  ATGATTTG  261
            ||||||||
Sbjct  563  ATGATTTG  570


> AT1G54280.1 | Symbols:  | ATPase E1-E2 type family protein / 
haloacid dehalogenase-like hydrolase family protein | chr1:20262766-20267821 
REVERSE LENGTH=4199
Length=4199

 Score =  113 bits (61),  Expect = 9e-25
 Identities = 69/73 (95%), Gaps = 0/73 (0%)
 Strand=Plus/Plus

Query  4     ACTTTGGCAATCGGTGATGGTGAAAATGATGTTGGAATGATTCAAGAAGCTGCTATTGGT  63
             ||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct  3123  ACTTTGGCAATTGGTGATGGTGCAAATGATGTTGGAATGATTCAAGAAGCTGATATTGGT  3182

Query  64    GTTGGCATAAGTG  76
             |||||||| ||||
Sbjct  3183  GTTGGCATCAGTG  3195


> AT1G17500.1 | Symbols:  | ATPase E1-E2 type family protein / 
haloacid dehalogenase-like hydrolase family protein | chr1:6018757-6023503 
FORWARD LENGTH=3953
Length=3953

 Score = 91.6 bits (49),  Expect = 4e-18
 Identities = 64/71 (90%), Gaps = 2/71 (3%)
 Strand=Plus/Plus

Query  7     TTGGCAATCGGTGATGGTGAAAATGATGTTGGAATGATTCAAGAAGCTG-CTATTGGTGT  65
             |||||||| ||||||||||  |||||||||||||||||||||||||||| | ||||||||
Sbjct  2587  TTGGCAATAGGTGATGGTGCGAATGATGTTGGAATGATTCAAGAAGCTGAC-ATTGGTGT  2645

Query  66    TGGCATAAGTG  76
             ||| || ||||
Sbjct  2646  TGGAATTAGTG  2656



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15683537688


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5