BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347421
Length=1902
Score E
Sequences producing significant alignments: (Bits) Value
AT3G42880.1 | Symbols: | Leucine-rich repeat protein kinase fa... 2964 0.0
AT5G20690.1 | Symbols: | Leucine-rich repeat protein kinase fa... 344 2e-93
> AT3G42880.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr3:14954587-14956577 FORWARD LENGTH=1902
Length=1902
Score = 2964 bits (1605), Expect = 0.0
Identities = 1803/1902 (95%), Gaps = 0/1902 (0%)
Strand=Plus/Plus
Query 1 ATGACTGCTGTTCTATTTCTCTGCTTCCTTCTCCTCTGTTTCTCCTTCACCCCTTCTTTG 60
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
Sbjct 1 ATGACTGCTGTTCTATTTCTCTGCTTCCTTCTCATCTGTTTTTCCTTCACCCCTTCTCTA 60
Query 61 CAAAACGTCAGTGAATCCGAACCGCTCGTGCGGTTCAAGAGCTCGGTGAATATAACTAAA 120
|||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 CAAAACGTTAGTGAATCGGAACCGCTCGTGCGGTTCAAGCGCTCGGTGAATATAACTAAA 120
Query 121 GGAGATTTGAATTCATGGAGAACAGGAACCGATCCTTGCAATGGAAAATGGTTTGGGATC 180
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GGAGACTTGAATTCATGGAGAACAGGAACCGATCCTTGCAATGGCAAATGGTTTGGGATC 180
Query 181 TATTGCCAAAAGGGCCAAACAGTCTCGGGCATTCACGTCACCCGGCTTGGTCTCTCCGGG 240
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 TATTGCCAAAAGGGTCAAACAGTTTCGGGCATTCACGTCACCCGGCTTGGTCTCTCCGGG 240
Query 241 ACCATCAACATCGAGGATTTAAAGGATCTTCCAAATCTAAGGACGATCAGGCTTGACAAC 300
||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 241 ACCATCAACATTGAGGATTTAAAAGATCTCCCAAATCTAAGAACGATCAGGCTTGACAAC 300
Query 301 AATCTTCTCTCAGGCCCACTCCCTCCTTTTTACAAGCTTCCAGGCTTGAAATCTCTTTTG 360
|||||||||||||| || ||||||||||||| |||||| || ||||||||||||||||||
Sbjct 301 AATCTTCTCTCAGGTCCTCTCCCTCCTTTTTTCAAGCTACCTGGCTTGAAATCTCTTTTG 360
Query 361 CTCTCAAACAATAGCTTTTCCGGCGAGATTGCTGATGATTTCTTCAAGGAAACGCCACAA 420
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 361 CTCTCAAACAATAGCTTTTCTGGTGAGATTGCTGATGATTTCTTCAAAGAAACGCCACAA 420
Query 421 CTCAAGCGGGTTTTTCTCGATAACAACCGGTTATCCGGAAAAATCCCCGCTTCTTTGATG 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTCAAGCGGGTTTTTCTTGATAACAACCGGTTATCCGGAAAAATCCCCGCTTCTTTGATG 480
Query 481 CAACTCGCAGGTCTCGAGGAGCTTCACATGCAAGGCAACCAGTTCTCTGGTGAGATACCT 540
|||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 481 CAACTCGCAGGTCTTGAGGAGCTTCACATGCAAGGAAACCAGTTCACTGGTGAGATACCT 540
Query 541 TCTCTTACAGATGGCAACAAGGTTTTGAAATCCCTCGACCTCTCCAACAATGACCTGGAG 600
|||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 541 CCTCTTACAGATGGCAACAAGGTTTTGAAATCCCTTGACCTCTCCAACAATGATCTAGAG 600
Query 601 GGAGAGATCCCAATAAGCATTTCCGAGAGGAAGAATCTAGAGATGAAATTTGAAGGAAAT 660
|||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 601 GGAGAGATCCCAATAACCATTTCCGACAGGAAGAATCTAGAGATGAAATTCGAAGGGAAT 660
Query 661 CAAAAGCTTTGCGGGTCACCTCTGAATATAGTATGCGATGAGAAACCTTCATCTACAGGG 720
|| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 661 CAGAGGCTTTGCGGGTCACCTCTGAATATAGAATGCGATGAGAAACCTTCATCTACAGGG 720
Query 721 TCAGGGAATGAGAAGAATAACACTGCAAAAGCTATCTTTATGGTCATCTTGTTTCTTTTG 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 TCAGGGAATGAGAAGAATAACACTGCAAAAGCTATCTTTATGGTCATCTTGTTTCTATTG 780
Query 781 ATATTCTTGTTTGTGGTAGCGATTATTACTAGATGGAAGAAGAAGAGGCAACCCGAGTTC 840
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 781 ATATTCTTGTTTGTGGTAGCTATTATTACAAGATGGAAGAAGAAGAGGCAACCCGAGTTC 840
Query 841 CGGATGCTCGGTAAAGACCACCTAAGCGACCAAGAGAGCGTGGAAGTCCGTGTACCAGAC 900
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 841 CGGATGCTCGGTAAAGACCACCTAAGCGACCAAGAGAGCGTGGAAGTTCGTGTACCGGAC 900
Query 901 TCGATAAAGAAGCCTATCGAGTCGAGCAAGAAGCGTAGCAACGCAGAAGGTTCCTCaaaa 960
|| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 901 TCAATAAAGAAGCCTATCGACTCGAGCAAGAAGCGTAGTAACGCAGAAGGTTCCTCAAAG 960
Query 961 aaaGGTTCATCACATAACGGAAAAGGTGGAGGTGGTGGTCCAGGAAGCGGCATGGGAGAC 1020
||||||||||| |||||||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct 961 AAAGGTTCATCGCATAACGGAAAAGGTGCAGGAGGTGGTCCAGGAAGCGGAATGGGAGAC 1020
Query 1021 ATTATAATGGTCAACAGCGAGAAAGGCTCCTTTGGTTTACCCGATCTCATGAAGGCTGCA 1080
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1021 ATTATAATGGTAAACAGCGAGAAAGGCTCCTTTGGTTTACCTGATCTCATGAAGGCTGCA 1080
Query 1081 GCCGAGGTGTTAGGAAATGGTAGCCTTGGATCTGCCTATAAGGCGGTGATGGCCAACGGA 1140
|| |||||| |||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1081 GCTGAGGTGCTAGGCAATGGTAGCCTTGGATCGGCCTACAAGGCGGTGATGGCCAACGGA 1140
Query 1141 TTATCCGTGGTTGTGAAAAGGATTAGGGATATGAACAAACTTGCACGTGATGCATTCGAT 1200
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1141 TTATCCGTGGTTGTGAAAAGGATTAGGGATATGAACAAACTTGCACGTGAAGCATTCGAT 1200
Query 1201 ACTGAGATGCAACGATTCGGGAAACTCCGACACCCTAACGTTCTTACCCCTCTAGCTTAT 1260
|||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1201 ACTGAGATGCAACGGTTCGGAAAACTCCGACACCCTAACGTTCTTACCCCTTTAGCTTAT 1260
Query 1261 CACTATCGCCGTGAAGAGAAACTTGTTGTCTCTGAATACATGCCTAAAAGCAGTCTACTC 1320
|||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CACTATCGTCGAGAAGAGAAGCTTGTTGTCTCTGAATACATGCCTAAAAGCAGTCTACTC 1320
Query 1321 TACGTTTTGCACGGAGATCGTGGGGTTTATCATGCGGAGCTAACTTGGGCAACAAGGTTA 1380
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1321 TACGTTTTGCACGGAGATCGTGGGGTTTATCATTCGGAGCTAACTTGGGCAACAAGATTG 1380
Query 1381 AAGATCATCCAAGGAGTGGCACGTGGAATGGACTTCTTGCACGAGGAGTTTGCGTCCTAC 1440
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1381 AAGATCATACAAGGAGTGGCACGAGGAATGGACTTCTTGCATGAGGAGTTTGCGTCCTAC 1440
Query 1441 GAGCTCCCACATGGAAATCTCAAATCCAGCAATGTTCTATTAAGTGAAACCTATGAGCCA 1500
|| || |||||||||||||||||||| ||||| |||||| ||||||||||||||||||||
Sbjct 1441 GATCTTCCACATGGAAATCTCAAATCTAGCAACGTTCTACTAAGTGAAACCTATGAGCCA 1500
Query 1501 TTGATTAGCGATTACGCGTTCCTCCCGCTTCTTCAGCCTAACAACGCCTCACATGCTTTA 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1501 TTGATTAGCGATTACGCGTTCCTCCCGCTTCTTCAGCCTAACAACGCCTCACAAGCTTTA 1560
Query 1561 TTCGCGTTCAAATCCCCTGAGTTCGTACAAAACCAGCAGATTTCACCAAAATCAGACGTC 1620
||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1561 TTCGCGTTCAAATCCCCCGAGTTTGTACAAAACCAGCAGGTTTCACCAAAATCAGACGTC 1620
Query 1621 TATTGCCTTGGAATTATCGTTCTTGAGGTCATGACGGGGAAGTTCCCATCTCAATACCTA 1680
|||||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 1621 TATTGCCTTGGAATAATCGTTCTCGAGGTCATGACGGGGAAGTTCCCGTCTCAGTACCTA 1680
Query 1681 AATAATGGTAAAGGGGGGACGGATATAGTTGAATGGGTGCAATCTTCAATCGCACAACAT 1740
|||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1681 AATACTGGTAAAGGAGGGACGGATATAGTCGAATGGGTGCAATCTTCAATCGCACAACAT 1740
Query 1741 AAAGAAGAAGAGCTGATAGATCCAGAGATAGCGAGTAATACCGATTCGACAAAACAAATG 1800
|||||||||||||| |||||||| ||||| ||||||||||| ||||||| ||||||||||
Sbjct 1741 AAAGAAGAAGAGCTTATAGATCCCGAGATTGCGAGTAATACTGATTCGATAAAACAAATG 1800
Query 1801 GTGGAATTGTTGCGGATCGGGGCTTCTTGTATCGCAAGTAACCCTAATGAAAGACAAAAC 1860
|| ||||||||||||||||||||| |||||||||||||||||||||| || |||||||||
Sbjct 1801 GTTGAATTGTTGCGGATCGGGGCTGCTTGTATCGCAAGTAACCCTAACGAGAGACAAAAC 1860
Query 1861 ATGAAGGAAATTGTTAGAAGGATAGAAAAAGTAACACTTTGA 1902
|||||||| |||||||||||||||||| |||||||||||||
Sbjct 1861 ATGAAGGAGATTGTTAGAAGGATAGAACGAGTAACACTTTGA 1902
> AT5G20690.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr5:7002453-7004551 FORWARD LENGTH=1980
Length=1980
Score = 344 bits (186), Expect = 2e-93
Identities = 402/506 (79%), Gaps = 16/506 (3%)
Strand=Plus/Plus
Query 16 TTTCT-CTGCTTCCTTCTCCTCTGTTTCTCCTTCACCCCTTCTTTGCAAAACGTCAGTGA 74
||||| || | |||| ||| | | |||||| || ||||||||||||| | || || ||
Sbjct 31 TTTCTCCT-CATCCTCCTCTTATCTTTCTCAATCTCCCCTTCTTTGCAGTATGTGAGCGA 89
Query 75 ATCCGAACCGCTCGTGCGGTTCAAGAGCTCGGTGAATATAACTAAAGGAGATTTGAATTC 134
||||||||||| ||||||||||| | ||||||||| ||||| ||||| || | |||||
Sbjct 90 GTCCGAACCGCTTGTGCGGTTCAAAAACTCGGTGAAGATAACCAAAGGGGACCTAAATTC 149
Query 135 ATGGAGA-ACAGGAACCGATCCTTGCAATGGAAAATGGTTTGGGATCTATTGCCAAAAGG 193
||||||| | ||| || |||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 150 ATGGAGAGA-AGGGACAGATCCTTGCAGTGGGAAATGGTTTGGGATCTATTGCCAAAAGG 208
Query 194 GCCAAACAGTCTCGGGCATTCACGTCACCCGGCTTGGTCTCTCCGGGACCATCAACATCG 253
| | ||||||||| |||||||||||||| || || |||||||| || ||||||| | | |
Sbjct 209 GTCTAACAGTCTCAGGCATTCACGTCACACGTCTAGGTCTCTCAGGAACCATCACCGTGG 268
Query 254 AGGATTTAAAGGATCTTCCAAATCTAAGGACGATCAGGCTTGACAACAATCTTCTCTCAG 313
| |||||||||||||| |||||||||| ||||||||||||||||||||| || ||||| |
Sbjct 269 ATGATTTAAAGGATCTCCCAAATCTAAAGACGATCAGGCTTGACAACAACCTCCTCTCCG 328
Query 314 GCCCACTCCCTCCTTT-TT-ACAAGCTTCCA-GGCTTGAAATCTCTTTTGCTCTCAAACA 370
| || ||||| | ||| || | || || || ||| | |||||||| ||||||| ||||
Sbjct 329 GTCCTCTCCCGCATTTCTTTA-AA-CT-CCGTGGCCTAAAATCTCTCATGCTCTCTAACA 385
Query 371 ATAGCTTTTCCGGCGAGATT-GCTGATGATTTCTTCAAGGAAACGCCACAA-CTCAAGCG 428
| ||||| ||||| ||||| | ||| ||||| |||||||| | | || || ||||||||
Sbjct 386 ACAGCTTCTCCGGAGAGATCCG-TGACGATTTTTTCAAGGACATGTCA-AAGCTCAAGCG 443
Query 429 GGTTTTTCTCGATAACAACCGGTTATCCGGAAAAATCCCCGCTTCT-TTGATGCAACTCG 487
| ||||| ||| | ||| ||| |||| ||||| | || || | ||| |||
Sbjct 444 ACTATTTCTTGATCATAACAAGTTCGAGGGAAGTATCCCTTCCTCCATT-ACGCAGCTCC 502
Query 488 CAGGTCTCGAGGAGCTTCACATGCAA 513
| |||||||||||||||||||||
Sbjct 503 CTCAACTCGAGGAGCTTCACATGCAA 528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94176222420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5