BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347425
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75820.1 | Symbols: CLV1, FAS3, FLO5, ATCLV1 | Leucine-rich ... 346 4e-94
AT1G54280.1 | Symbols: | ATPase E1-E2 type family protein / ha... 289 6e-77
AT4G34880.1 | Symbols: | Amidase family protein | chr4:1661554... 259 5e-68
AT3G05190.1 | Symbols: | D-aminoacid aminotransferase-like PLP... 200 3e-50
AT1G17500.1 | Symbols: | ATPase E1-E2 type family protein / ha... 150 3e-35
> AT1G75820.1 | Symbols: CLV1, FAS3, FLO5, ATCLV1 | Leucine-rich
receptor-like protein kinase family protein | chr1:28463462-28466971
REVERSE LENGTH=3431
Length=3431
Score = 346 bits (187), Expect = 4e-94
Identities = 223/240 (93%), Gaps = 4/240 (2%)
Strand=Plus/Plus
Query 261 GAACTCACTGATAATTTCTTCTCCGGTGAACTTCCGACAACGAT--CCGTCGATGTTCTC 318
|||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||
Sbjct 1634 GAACTCACTGATAATTTCTTCTCCGGTGAACTTCCGGTAACGATGTCCGGCGATGTTCTC 1693
Query 319 GATCAGATTTACCTCTCAAACAACTGGTTTTCTGGCGAGATTCCACCTGCGATCGGTAAT 378
||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1694 GATCAGATTTACCTCTCTAACAACTGGTTTTCCGGCGAGATTCCACCTGCGATTGGTAAT 1753
Query 379 TTCCCCAATTTACAGACTCTGTTCTTAGATCGGAACCGATTTCGCGGGAAT-TTACCGAG 437
||||||||| |||||||||| |||||||||||||||||||||||||| || || |||||
Sbjct 1754 TTCCCCAATCTACAGACTCTATTCTTAGATCGGAACCGATTTCGCGGCAACATT-CCGAG 1812
Query 438 GGAAATCTTCGAATTGAAGCATTTATCGAAGATCAACACAAGTGCGAACAATATCACCGG 497
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1813 AGAAATCTTCGAATTGAAGCATTTATCGAGGATCAACACAAGTGCGAACAACATCACCGG 1872
Score = 180 bits (97), Expect = 4e-44
Identities = 115/123 (93%), Gaps = 3/123 (2%)
Strand=Plus/Plus
Query 486 CAATATCACCGGTTCAATCCCTACCAGAATCGGAAACATGACGAGTTTAACAACTCTCGA 545
|||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2006 CAAT-TAACCGGTTCAATCCCTACCGGAATCGGAAACATGACGAGTTTAACAACTCTCGA 2064
Query 546 TCTCTCTTTCAAAGATCTCTCCGGAAGAGTACCACTCGGTGGTCAATTCATGGT-TTCA- 603
|||||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||||
Sbjct 2065 TCTCTCTTTCAACGATCTCTCCGGTAGAGTACCACTCGGTGGTCAATTCTTGGTGTTCAA 2124
Query 604 CGA 606
|||
Sbjct 2125 CGA 2127
> AT1G54280.1 | Symbols: | ATPase E1-E2 type family protein /
haloacid dehalogenase-like hydrolase family protein | chr1:20262766-20267821
REVERSE LENGTH=4199
Length=4199
Score = 289 bits (156), Expect = 6e-77
Identities = 182/195 (93%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 705 GTTTCTTGCCCTTGTAGTTGACTATGCATCAGTTATCTGTTGTCGTGTCTCTCCCAAACA 764
|||||||||||||| |||||||| ||||||||| || || ||||||||||||||||||||
Sbjct 3017 GTTTCTTGCCCTTGCAGTTGACTGTGCATCAGTGATATGCTGTCGTGTCTCTCCCAAACA 3076
Query 765 GAAAGCACTTGTAACACGGCTAGCCAAAGAAGGAACAGGAAAAACGACTTTGGCAATCGG 824
|||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 3077 GAAAGCACTTGTAACAAGGCTGGCCAAAGAAGGAACAGGAAAAACAACTTTGGCAATTGG 3136
Query 825 TGATGGTGAAAATGATGTTGGAATGATTCAAGAAGCTGCTATTGGTGTTGGCATAAGTGG 884
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 3137 TGATGGTGCAAATGATGTTGGAATGATTCAAGAAGCTGATATTGGTGTTGGCATCAGTGG 3196
Query 885 CGTTGAAGGTATGCA 899
||||||||| |||||
Sbjct 3197 CGTTGAAGGCATGCA 3211
> AT4G34880.1 | Symbols: | Amidase family protein | chr4:16615549-16617424
FORWARD LENGTH=1401
Length=1401
Score = 259 bits (140), Expect = 5e-68
Identities = 163/174 (94%), Gaps = 2/174 (1%)
Strand=Plus/Plus
Query 55 ATCAGGCTTACCTCGACGTT-TGCTATCCAAGAAGCCACCATTGAAGACATCAGACTTGC 113
|||||||||| ||| ||||| | | ||||||||||| |||||||||||||| ||| ||||
Sbjct 94 ATCAGGCTTAGCTCAACGTTCT-CGATCCAAGAAGCTACCATTGAAGACATTAGAGTTGC 152
Query 114 TTTTAAGGAGAAACGACTAACATCAAAGCAGCTTGTTGAGTTGTATCTCGAAGCAATCTC 173
||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 153 TTTCAACGAGAAACGACTAACATCAAAGCAGCTTGTGGAGTTGTATCTCGAAGCAATCTC 212
Query 174 CAAACTTAATCCAATACTCCACGCAGTCATCGAGACGAATCCTGATGCGTTGAT 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 CAAACTTAATCCAATACTCCACGCAGTCATCGAGACGAATCCTGATGCGTTGAT 266
> AT3G05190.1 | Symbols: | D-aminoacid aminotransferase-like PLP-dependent
enzymes superfamily protein | chr3:1471397-1475784
FORWARD LENGTH=2147
Length=2147
Score = 200 bits (108), Expect = 3e-50
Identities = 121/127 (95%), Gaps = 1/127 (1%)
Strand=Plus/Plus
Query 1092 GGCTTGGGAGGAATTAGTGTCGATATACAGTGATCTCTGTCACATGGGAACACCACCATC 1151
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 445 GGCTTGGG-GGAATTAGTGTCGATATACAGTGATCTCTGTCAGATGGGAACACCACCAGC 503
Query 1152 AGTCATCAATGCGGATGAGCTTCAGCGAGATCCCGAGACTACACTACACGGTCTTTGTGA 1211
||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 504 AGTCATCGATGCGGATGAGCTTCAGCGAGATCCCGAGACTACACTTCGCGGTCTTTGTGA 563
Query 1212 TGATTTG 1218
|||||||
Sbjct 564 TGATTTG 570
> AT1G17500.1 | Symbols: | ATPase E1-E2 type family protein /
haloacid dehalogenase-like hydrolase family protein | chr1:6018757-6023503
FORWARD LENGTH=3953
Length=3953
Score = 150 bits (81), Expect = 3e-35
Identities = 146/176 (83%), Gaps = 10/176 (6%)
Strand=Plus/Plus
Query 729 TGCATCAGTTATCTGTTGTCGTGTCTCTCCCAAA-CAGAAAGCACTT-GTAAC-ACGGCT 785
||| ||||| || || |||||||| ||| ||||| |||||||| || ||||| | || |
Sbjct 2502 TGCCTCAGTCATTTGCTGTCGTGTGTCT-CCAAAGCAGAAAGC-TTTGGTAACGA-GGTT 2558
Query 786 AGCCAAAGAAGGAA-CAGGAAAAACGACTTTGGCAATCGGTGATGGTGAAAATGATGTTG 844
|| ||||| |||| | |||||| | || |||||||| |||||||||| ||||||||||
Sbjct 2559 AGTTAAAGAGGGAACCGGGAAAATC-ACATTGGCAATAGGTGATGGTGCGAATGATGTTG 2617
Query 845 GAATGATTCAAGAAGCTG-CTATTGGTGTTGGCATAAGTGGCGTTGAAGGTATGCA 899
|||||||||||||||||| | ||||||||||| || ||||| |||||||| |||||
Sbjct 2618 GAATGATTCAAGAAGCTGAC-ATTGGTGTTGGAATTAGTGGGGTTGAAGGAATGCA 2672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68423342835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5