BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347446
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53270.1 | Symbols: | Small nuclear RNA activating complex ... 1197 0.0
> AT3G53270.1 | Symbols: | Small nuclear RNA activating complex
(SNAPc), subunit SNAP43 protein | chr3:19750047-19753155 REVERSE
LENGTH=1473
Length=1473
Score = 1197 bits (648), Expect = 0.0
Identities = 781/846 (92%), Gaps = 6/846 (1%)
Strand=Plus/Plus
Query 1 ATGAATCTTTCTCCGTTCAAGAAAGATATCGATGAGCTCATAGACGAGTTTGCAGAGGGT 60
|||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||| |
Sbjct 272 ATGAATCTTTCTCCGTTCAAGAGAGATATCGATGAGCTGATAGACGAGTTTGTGGAGGAT 331
Query 61 GATTTGACAACGTTTATTGATATGAAGAGCGTTTGGCTATCCCGAAAGTTTTCTTATGTA 120
||||||||||| ||| |||||||||||| || |||||||| ||||||||||| || ||
Sbjct 332 GATTTGACAACCTTTGCTGATATGAAGAGTGTCTGGCTATCTAGAAAGTTTTCTCATATA 391
Query 121 TATGATGCTAGTCCTACCAGCAACTTGGCCTTTTTCATGCAGTCACTATATGCACATACA 180
||||| |||||||||| ||||||| | ||||||||||||||||||||||||| |||||
Sbjct 392 TATGAAGCTAGTCCTAACAGCAACCTAGCCTTTTTCATGCAGTCACTATATGTTCATACC 451
Query 181 ATCGGTCACATGGTTAGTATTGATTCTTTTTCACGAAGACTTGGAGGTCTTTACTGTCTC 240
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 452 ATTGGTCACATGGTTAGTATTGATTCTTTTTCACGGAGACTTGGAGGTCTTTACTGTCTC 511
Query 241 TATTGCCTTCATGAGATCCAACCCTTTAAACCCAAGTTCAGAATTTATATCTCACTTGAA 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 512 TATTGCCTTCATGAGATCCAACCCTTTAAACCCAAGTTCAGAATCTATATCTCACTTCAA 571
Query 301 GAGCTCGGGAAATTTAGGGACCTTGTAGTTGAGGCAAAAGATAAAGGTGTAGAGATAGTT 360
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 572 GAGCTTGGGAAATTTAGGGATCTTGTAGTTGAGGCAAAAGATAAAGGTGTAGAGATAGCT 631
Query 361 GCTGCTGTGGCAAAACAAATGCTTGATAAGAACATGTTTATCTTTGGAGCTGTGGAGGAA 420
||||||||||||||| ||||||||||| |||||||||| || |||||||||||||| ||
Sbjct 632 GCTGCTGTGGCAAAAAAAATGCTTGATGAGAACATGTTAATATTTGGAGCTGTGGATGAG 691
Query 421 ACTTTTGCAACCATGA-AACTTAATCAATTAACAGAGCTACAGAACGCACGTGTGCGGTT 479
|| | |||||||| || || || |||||||||| ||||||||||||||||||||||||||
Sbjct 692 ACATCTGCAACCAAGACAA-TTCATCAATTAACCGAGCTACAGAACGCACGTGTGCGGTT 750
Query 480 TGCCTATGATAGGTTAATCTCTGACACTACTATTGAGCAATATATTCATTTGGATATGGG 539
||||||||| | |||||||| |||||||| |||| | |||| ||||||||||||||||||
Sbjct 751 TGCCTATGAGAAGTTAATCTGTGACACTAGTATTAACCAATTTATTCATTTGGATATGGG 810
Query 540 TAAGGAAGTTAATCTGAATTCCCTAGATGAAATGTCTATAGAATATGCAGAGGCCAAGAA 599
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 811 TAAGGAAGTTGATCTGAATTCCCTAGATAAAATGTCTATAGAATATGCAGAGGCCAAGAA 870
Query 600 GCGTGCAATCGAAGGTGCAGGAGAAATAATGGAGATTGAGGATATAAAGCACATATCaga 659
||||||| ||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 871 GCGTGCAGTCGAAGGTGCAGGAGAAATAATGGAGATTGATGACATAAAGCATATATCAGA 930
Query 660 agagaaagagatgatgggagagagaatggagaaaatgaaagaagaatgGGATTCACAAAG 719
|||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 931 AGAGAAAGAGTTGATGGGAGAGAGAATGGAGAAATTGAAAGAGGAATGGGATTCACAAAG 990
Query 720 ACATT-CATTTTATGAACAAACCAAGCTTGATGGTCTTACTACGACACCGAAACTGTTGA 778
|| || | ||||||||||||||||||||||||||| ||||||||||||| |||| |||||
Sbjct 991 ACTTTAC-TTTTATGAACAAACCAAGCTTGATGGTTTTACTACGACACCAAAACAGTTGA 1049
Query 779 -AAGATGTGGAACATGATGAAGATGATGGGTTTGATGAGCTTGATCGCTTACTTTCTCAA 837
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 CAA-ATGTGGAACATGATGAAGATGATGGGTTTGATGAGCTTGATCGCTTACTTTCTCAA 1108
Query 838 AGCTAG 843
||||||
Sbjct 1109 AGCTAG 1114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41091532246
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5