BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347467
Length=2064
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43670.1 | Symbols: | Copper amine oxidase family protein |... 2706 0.0
AT1G62810.1 | Symbols: | Copper amine oxidase family protein |... 1319 0.0
AT3G43820.1 | Symbols: | pseudogene, copper amine oxidase prot... 427 2e-118
> AT3G43670.1 | Symbols: | Copper amine oxidase family protein
| chr3:15567099-15569901 FORWARD LENGTH=2276
Length=2276
Score = 2706 bits (1465), Expect = 0.0
Identities = 1850/2037 (91%), Gaps = 21/2037 (1%)
Strand=Plus/Plus
Query 38 TACTTTTAAGCTTCCTCTTCCTCTTCGCAACTTTCGGGTCAAGTTCCAGGA---CCCGAT 94
||||||||||||| ||||| |||||| | ||| ||| ||||||||||| || ||||||
Sbjct 80 TACTTTTAAGCTTACTCTTTCTCTTCACTACTCTCGCGTCAAGTTCCAAGACCCCCCGAT 139
Query 95 TCAAGTATTCGTTAGAGAAGCCTCACCACCCGCTTGACCCACTAACGTCACATGAAATAA 154
||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||
Sbjct 140 TCAAGTATTCGTTAGAGAAGCCTCACCACCCACTTGACCCACTAACGACACCTGAAATAA 199
Query 155 AGAGAGTCCGAACCATTCTCTCCGGTCATGATCCGGGTTTCGGGTCCGGGTCAGCCATCA 214
||||||||| |||||| ||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 200 AGAGAGTCCAAACCATCCTCTCGGGTCATGATCCGGGTTTCGGGTCCGGGTCAACCATCA 259
Query 215 TTCACGCCATGGCTCTCGACGAGCCGGAGAAGCAACGTGTCGTCCGGTGGAAGAAAGGTG 274
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 260 TTCACGCCATGGCTCTCGACGAGCCGGATAAGCAACGTGTCATCCGGTGGAAGAAAGGTG 319
Query 275 ATCGTCTCCCGCCGCGAAGAGCGGAGGTTCTTGCGATGTCTAACGGCGAGAGTCACGTGC 334
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 320 ATCGTCTCCCGCCGCGAAGAGCGGAGATTCTTGCTATGTCTAACGGCGAGAGTCACGTGC 379
Query 335 TCACTGTGGATCTTAAATCCGGTCGGGTTGTTTCCGATTTGGTCAACCCCACTTTTGGGT 394
|||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 380 TCACGGTGGATCTTAAATCCGGTCGGGTTGTTTCTGATTTGGTCAACCCGACTTTTGGAT 439
Query 395 ATCCGATTCTTACCATGAATGACATCGTCGCTGCCTCGCAGGTTCCGTT-CAAGAGTGTG 453
| ||||||||||| ||||| || ||| |||| | ||| |||||||| || |||||| |||
Sbjct 440 ACCCGATTCTTACTATGAAGGATATCATCGCAGTCTCACAGGTTCC-TTACAAGAGCGTG 498
Query 454 GAGTTTAATCGTTCAATCGAGGCGCGTGGGATTCCGTCCTCCGATTTGATATGTATAACA 513
||||| ||||| |||||||| |||||||||||||||| ||||| |||||| ||||| |||
Sbjct 499 GAGTTCAATCGCTCAATCGAAGCGCGTGGGATTCCGTTCTCCGGTTTGATTTGTATTACA 558
Query 514 CC-TGCAGCTGGATGGTTTGGACCGGACGAGGAAGGGCGAAGAGTCATCAAGATCCAATG 572
|| | | || || |||| |||||||||||| ||||| ||| ||||||| |||||||||||
Sbjct 559 CCGTTC-GCCGGTTGGTATGGACCGGACGAAGAAGGACGACGAGTCATAAAGATCCAATG 617
Query 573 TTTTTCAAAGAAAGACACCGTCAATTTCTACATGAGACCCATTGAAGGACTTTATCTAAC 632
||| |||||| ||||||| |||||||||||||||||||| || |||||||||||| ||||
Sbjct 618 TTTCTCAAAGCAAGACACTGTCAATTTCTACATGAGACCTATCGAAGGACTTTATTTAAC 677
Query 633 GGTCGATATGGACAAATTAGAAATCATCAAGATTGTTGACAATGG-CCTGGTTCCAGTCC 691
||||||||||| |||||||| |||||||||||||| |||||||| || |||||| || |
Sbjct 678 CGTCGATATGGATAAATTAGAGATCATCAAGATTGTAGACAATGGACC-GGTTCCGGTTC 736
Query 692 CCAAGTCTACCGGTACAGAATATAGACATGGATTT-TTGAACGAAACAGTACATATGGAC 750
|||||||||||||||| ||||||||| |||| ||| || || ||||| ||| ||||||||
Sbjct 737 CCAAGTCTACCGGTACGGAATATAGATATGGGTTTCTT-AATGAAACGGTATATATGGAC 795
Query 751 CGCGTCAACCCAATGTCGATGGAGCAGCCTGACGGTCCAAG-TTTCAAGGTTGAAGATGG 809
|| ||||||||||||||||||||||| || ||||||||||| |||||| ||||| |||||
Sbjct 796 CGTGTCAACCCAATGTCGATGGAGCAACCGGACGGTCCAAGTTTTCAA-GTTGAGGATGG 854
Query 810 ATACTTGGTTAAGTGGGCGAATTGGAAATTTCATATTAAACCGGACCAACGTGCCGGTAT 869
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 855 ATACTTGGTTAAGTGGGCGAATTGGAAATTTCATATTAAACCGGATCAACGTGCCGGTAT 914
Query 870 GATCATCTCACAGGCTTCAGTTCGTGATTCCAAGACAGGTGAAGCAAGAAGTGTGATGTA 929
||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 915 GATTATCTCACAGGCTACAGTTCGTGATTCCAAGACAGGTGAAGCAAGAAGTGTAATGTA 974
Query 930 CAAAGGTTTTGCGTCGGAGTTGTACGTACC-ATACATGGACCCAGAGGAAGGTTGGTACT 988
||||||||||||||||||||||| |||||| | | ||||| |||| |||||||||||| |
Sbjct 975 CAAAGGTTTTGCGTCGGAGTTGTTCGTACCGA-ATATGGATCCAGGGGAAGGTTGGTATT 1033
Query 989 CCAAAGCTTTTATGGATGCTGGAGAGTTTGGTTTAGGACCTACTTCAATGCCGCTTGTGC 1048
| ||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1034 CAAAAGCTTACATGGATGCTGGAGAGTTTGGTTTAGGACCTTCTTCAATGCCACTTGTGC 1093
Query 1049 CACTTAACGACTGTCCTCGAAACGCTTACTACATTGACGGTATCTTTGCTTCTCCTAAAG 1108
|||| |||||||||||||||||||||||||||||||| ||| |||| ||||||||| |||
Sbjct 1094 CACTCAACGACTGTCCTCGAAACGCTTACTACATTGATGGTTTCTTCGCTTCTCCTGAAG 1153
Query 1109 GCGA-TCCCATCCTTCAGCCTAACATGATCTGCTTGTTTGAACGCTACGCCGGCGACACT 1167
|| | ||| || ||||| |||||||||||||||||||| ||||||||||| || ||||||
Sbjct 1154 GC-ATTCCAATACTTCAACCTAACATGATCTGCTTGTTCGAACGCTACGCGGGTGACACT 1212
Query 1168 AGCTGGCGCCACTCTGAGATTCTTCTCCCTGGTACAGATATAAGGGAGTCAAGGGCAAAG 1227
|||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1213 AGCTGGCGACACTCTGAGATTCTTCTCCCTGGTGTAGATATAAGAGAGTCAAGGGCAAAG 1272
Query 1228 GTGACGCTGGTGGCTAGAATGGCTTGTTCGGTTGGGAACTATGACTATACGTTTGATTGG 1287
|| || ||||| ||||||||||| ||||| |||||||||||||| |||| |||||||||
Sbjct 1273 GTTACACTGGTAGCTAGAATGGCATGTTCTGTTGGGAACTATGATTATATTTTTGATTGG 1332
Query 1288 GAGTTTCAAATGGATGGTTTGATTCGCGTTACGGTCGCAGCCTCAGGGATGTTGATGGTG 1347
|||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 1333 GAGTTTCAAATGGATGGTGTGATTCGTGTTACGGTCGCGGCCTCGGGGATGTTGATGGTG 1392
Query 1348 AAAGGGACGCCTTAC-ACAAACGTACAAGACTTGGGTGAGAAAGAAGCTGATTCTGGACC 1406
||||| ||| ||||| | |||||| ||||||||||||||||||| | ||||||||||||
Sbjct 1393 AAAGGAACGGCTTACGA-AAACGTTGAAGACTTGGGTGAGAAAGAGGATGATTCTGGACC 1451
Query 1407 TTTGATCTCAGAAAACGTTATAGGAGTCGTCCATGATCATTTCATAACGTTTCATCTAGA 1466
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1452 GTTGATCTCAGAAAACGTTATAGGAGTCGTCCATGATCATTTCATATCGTTTCATCTAGA 1511
Query 1467 CATAGACATTGACGAGCCCGCCAACAACTCCTTCGTCAAGGTTCATCTAGAGAAGCAGAG 1526
||| |||||||| | | | ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1512 CATGGACATTGATGGGTCAGCCAACAACTCCTTCGTTAAGGTTCATCTAGAGAAGCAGAG 1571
Query 1527 ACTTCCGCCTGGTGGATCAAGGAGAAAGAGTTACTTGAAGGTCAAGAAATATGTAGCCAA 1586
|||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1572 ACTTCCACCTGGAGAATCAAGGAGAAAGAGTTACTTGAAGGTCAAGAAATATGTAGCCAA 1631
Query 1587 GACTGAGAAAGATGCTCAGATCAAGTTGAGCATGTACGACCCCTACGAGTTCCATCTTGT 1646
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1632 GACTGAGAAAGATGCTCAGATCAAGATGAGCCTGTACGACCCCTACGAGTTCCATCTTGT 1691
Query 1647 GAACCCTA-CTCGTCGGTCTCGTTTAGGGAACCCGGCTGGTTACAAGCTTGTGCCTGGTG 1705
|||||||| | || | ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1692 GAACCCTAAC-CGACTTTCTCGGTTAGGGAACCCGGCTGGTTACAAGCTTGTACCTGGTG 1750
Query 1706 GTAATGCTGCAAGTTTGCTTGATCATGATGATCCGCCACAAATTAGAGGGGCTTTCACAA 1765
||||||||||||||||||| |||||||||||||| || ||||| |||| ||||||||||
Sbjct 1751 GTAATGCTGCAAGTTTGCTCGATCATGATGATCCACCGCAAATGCGAGGCGCTTTCACAA 1810
Query 1766 ACAACCGGATATGGGTGACACGGTATAACCGGTCAGAGCAATGGGCTGGTGGCCTTTTGA 1825
|||| | |||||||||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 1811 ACAATCAGATATGGGTGACTCGGTATAACCGGTCAGAGCAATGGGCTGGAGGGCTTTTGA 1870
Query 1826 TGTACCAGAGCCGTGGTGAAGACACGCTACAAGTTTGGTCGGACCGGGATCGTTCGATTG 1885
||||||||||||||||||||||||| |||||||||||||| ||| | ||||| || ||||
Sbjct 1871 TGTACCAGAGCCGTGGTGAAGACACACTACAAGTTTGGTCCGACAGAGATCGGTCCATTG 1930
Query 1886 AGAACGAGGACATAGTGTTGTGGTATACATTAGGGTTCCATCACGTACCGTGCCAAGAAG 1945
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1931 AGAACAAGGACATAGTGTTGTGGTATACACTAGGGTTCCATCACGTACCGTGCCAAGAAG 1990
Query 1946 ACTTTCCGGTTATGCCAACGATAGCAGCTAGCTTTGAACTTAAACCGGTTAATTTCTTTG 2005
| ||||| || |||||||| |||||| |||||||||||||||||||||| |||||||| |
Sbjct 1991 ATTTTCCAGTGATGCCAACAATAGCATCTAGCTTTGAACTTAAACCGGTCAATTTCTTCG 2050
Query 2006 AATCAAACCCGATTCTTGGGATCACACCTTTCTTCGAGAAAGACTTGCAAGTCTGTT 2062
|||| |||||| | |||||||| |||||||||||||||||||||| | ||||||||
Sbjct 2051 AATCGAACCCGGTACTTGGGATTTCACCTTTCTTCGAGAAAGACTTACCAGTCTGTT 2107
> AT1G62810.1 | Symbols: | Copper amine oxidase family protein
| chr1:23257726-23261966 REVERSE LENGTH=2860
Length=2860
Score = 1319 bits (714), Expect = 0.0
Identities = 1578/1992 (79%), Gaps = 72/1992 (4%)
Strand=Plus/Plus
Query 106 TTAGAGAAGCCTCACCACCCGCTTGACCCACTAAC-GTCAC-ATGAAATAAAGAGAGTCC 163
||||| |||||||| || || ||||| |||||||| || | | ||||| || ||||||
Sbjct 357 TTAGAAAAGCCTCATCATCCACTTGATCCACTAACGGT-GCGA-GAAATCAATAGAGTCA 414
Query 164 GAACCATTCTCTCCG-GTCATGATCCGGGTTTCGGGTCCGGGTCAGCCATC-ATTCACGC 221
|||| || |||| || ||||| |||||||| || |||||||| |||| | |||||| |
Sbjct 415 GAACAATACTCT-CGAACCATGACCCGGGTTTTGGTTCCGGGTCGGCCA-CGATTCACTC 472
Query 222 CATGGCTCTCGACGAGCCGGAGAAG-CAACGTGTCGTCCGGTGGAAGAAAGGTGAT-CGT 279
|||||||||||| |||||||||||| | ||||||||||| ||||||||| || || |
Sbjct 473 CATGGCTCTCGATGAGCCGGAGAAGTC-ACGTGTCGTCCAGTGGAAGAAGGGAAATAAG- 530
Query 280 CTCCCGCCGCGAAGAGCGGAGGTTC-TTGC-GATGTCTAACGG-CGAGAGTCACGTGCTC 336
|| | | | |||||||| | || || | || || | || | | | || | | |
Sbjct 531 CTTCTGTCACGAAGAGCTGCGG-TCGTAGCTTAT-TGGGGTGGTC-AAACACATGAGATA 587
Query 337 ACTGTGGATCTTAAATCCGGTCGGGTTGTTTCCGATTTGGTCAACCCCACTTTTGGGTAT 396
|| ||||||||| | || |||||||| ||||| ||| || | |||| |||| ||||||
Sbjct 588 ACGGTGGATCTTGATTCGGGTCGGGTAGTTTCTGATGTGATTAACCGGACTTCAGGGTAT 647
Query 397 CCGATTCTTACCATGAATGACATCGTCGCTGCCTCGCAGGTTCCGTTCAAGAG-TGTGGA 455
|||||||| ||| |||| ||| || ||||||| ||||||||||| || ||||| | ||||
Sbjct 648 CCGATTCTCACCTTGAACGACGTCTTCGCTGCTTCGCAGGTTCCTTTGAAGAGCT-TGGA 706
Query 456 GTTTAATCGTTCAATCGAGGCGCGTGGGATTCCGTCCTCCGATTT-GATATGTATAACAC 514
||||| || || || || || |||||| || || |||||||| | | || || ||||
Sbjct 707 ATTTAACCGCTCCATTGAAGCTCGTGGGGTTAAGTTTTCCGATTTAGCT-TGCATCACAC 765
Query 515 CTG-CAGCTGGATGGTTTGGACCGGACGAGGAAGGGCGAAGAGTCATCAAGA-TCCAATG 572
| | || |||||||||||| |||| || ||||| || |||||||| |||| | |||||
Sbjct 766 C-GTTTGCCGGATGGTTTGGATCGGAGGAAGAAGGACGTAGAGTCAT-AAGAGTTCAATG 823
Query 573 TTTTTCAAAG--A-AAGACACCGTCAATT-TCTACATGAGACCCA-TTGAAGGACTTTAT 627
|||| | | | ||| ||| ||||| | | |||||| ||| | ||||||||||||
Sbjct 824 --TTTC-ACGTTACAAGGCACTACCAATTAT-TTTATGAGA-CCACTCGAAGGACTTTAT 878
Query 628 CTAACGGTCGATATGGACAAATTAGAAATCATCAAGATTGTTGACAATGGCCTGGTTCC- 686
||||||||||| | |||||||| || | |||||||| | || || |||| ||||
Sbjct 879 GTAACGGTCGATCTAGACAAATTGGAGGTTATCAAGATCATCGATAAAGGCCCAATTCCA 938
Query 687 AGTCCCCAAGTCTACCGGTACAGAATATAGACATGGAT-TTTTGAACGAAA-CAGTACAT 744
| |||| ||| || ||||||||||||| | ||| | || ||| ||| | || |||
Sbjct 939 ATTCCCAAAGCCT-CCGGTACAGAATACCGGTTTGG-TGTTCAGAA-TAAACCGGTGCAT 995
Query 745 ATGGACCGCGTCAACCCAATGTCGATGGAGCAGCCTGACGGTCCAAGTTTCAAGGTTGAA 804
||||| || | ||||| || ||||||||||| ||||||||||| ||||| | ||| |||
Sbjct 996 ATGGATCGTATTAACCCGATTTCGATGGAGCAACCTGACGGTCCCAGTTTTAGGGTCGAA 1055
Query 805 GATGGATACTTGGTTAAGTGGGCGAATTGGAAATTT-CATATTAAACCGGACCAACGTGC 863
||||| | |||||||||||||| |||||| ||| ||| ||||| | |||||||| ||
Sbjct 1056 GATGGGCATTTGGTTAAGTGGGCTAATTGG-GTTTTCCATGTTAAAGCTGACCAACGAGC 1114
Query 864 CGGTATGATCATCTCACAGGCTTCAGTTCGTGATTCCAAGACAGGTGAAGCAAGAAGTGT 923
|||||||||||| || ||||| | |||||||| ||| ||||||||||| ||||||||||
Sbjct 1115 CGGTATGATCATATCTCAGGCCACGGTTCGTGACTCCGAGACAGGTGAACCAAGAAGTGT 1174
Query 924 GATGTACAAAGGTTTTGCGTCGGAGTTGTACGTACCATACATGGACCCAGAGGAAGGTTG 983
|||||||||||| || | || ||||||| ||||| ||||||||||| |||||||| ||
Sbjct 1175 GATGTACAAAGGATTCCCATCAGAGTTGTTTGTACCGTACATGGACCCTGAGGAAGGATG 1234
Query 984 GTACTCCAAAGCTTTTATGGATGCTGGAGAGTTTGGTTTAGGACCTACTTCAATGCCGCT 1043
||||| ||||| || ||||||||| || ||| | ||||||||||| || ||||||||||
Sbjct 1235 GTACTACAAAGGTTATATGGATGCAGGCGAGCTCGGTTTAGGACCCACGGCAATGCCGCT 1294
Query 1044 TGTGCCACTTAACGACTGTCCTCGAAACGCTTACTACATTGACGGTATCTTT-GCTTCTC 1102
||||| || ||||| || |||||||| ||||||| || |||||| | ||| || ||||
Sbjct 1295 CGTGCCTCTCAACGATTGCCCTCGAAATTCTTACTATATAGACGGTGT-TTTCGCCTCTC 1353
Query 1103 CTA-AAGGCGATCCCATCCTTCAGCCTAACATGATCTGCTTGTTTGAACGCTACGCCGGC 1161
| | | ||| | ||||| |||| ||||| ||||| ||||||||||||||||| || |||
Sbjct 1354 C-AGACGGCAAACCCATTGTTCAACCTAATATGATATGCTTGTTTGAACGCTATGCAGGC 1412
Query 1162 GACACT-AGCTGGCGCCACTCTGAGATTC-TTCTCCCTGGTACAGATATAAGGGAGTCAA 1219
|| | | |||||||| || |||||||| | || | || | | |||||||| |||||||
Sbjct 1413 GATA-TCAGCTGGCGACATTCTGAGATCCTTTTTGCC-AATGCCGATATAAGAGAGTCAA 1470
Query 1220 GGGCAAAGGTGACGCTGGTGGCTAGAATGGCTTGTTCGGTTGGGAACTATGACTATACGT 1279
|| |||| || || |||| ||| ||||||| ||||||||| || || ||||||| |
Sbjct 1471 GGCCAAAAGTTACATTGGTAGCTCGAATGGCAACTTCGGTTGGAAATTACGACTATA-TT 1529
Query 1280 TT-GATTGGGAGTTTCA-AATGGATGGTTTGATTCGCGTTACGGTCGCAGCCTCAGGG-A 1336
|| |||||||||||||| | | ||||||||||| || ||||||||||| || || ||| |
Sbjct 1530 TTCGATTGGGAGTTTCAGACT-GATGGTTTGATCCGTGTTACGGTCGCGGCTTC-GGGAA 1587
Query 1337 TGTTGATGGTGAAAGGGACGCCTTACACA-AACGTACAAGACTTGGGTGAGAAAGAAGCT 1395
|||| |||||||||||||| |||||| | || ||| | ||||| ||||| | || | |
Sbjct 1588 TGTTAATGGTGAAAGGGACACCTTAC-GATAATGTAGATGACTTAGGTGATAGGGAGGAT 1646
Query 1396 GATTCTGGACCTTTGATCTCAGAAAACGTTATAGGAGTCGTCCATGATCATTTCATAACG 1455
||| ||||||| |||||||| || || || || |||||||| ||||||||||||||||||
Sbjct 1647 GATGCTGGACCGTTGATCTCTGAGAATGTGATTGGAGTCGTTCATGATCATTTCATAACG 1706
Query 1456 TTTCATCTAGACATAGACATTGACGAGCCCGCC-AACAACTCCTTCGTCAAGGTTCATCT 1514
|||||||||||||| || ||||| | | ||| || || || || || |||||||||||
Sbjct 1707 TTTCATCTAGACATGGATATTGATG-GACCGATGAATAATTCTTTGGTTAAGGTTCATCT 1765
Query 1515 AGAGAAGCAGAGACTTCCGCCTGGTGGATCAAGGAGAAAGAGTTACTTGAAGGTCAAGAA 1574
||||||||||||| |||| | || ||| || |||||||||||||||||||||||
Sbjct 1766 AGAGAAGCAGAGAGTTCCAACAGGAAAATCGCCAAGGAAGAGTTACTTGAAGGTCAAGAA 1825
Query 1575 ATATGTAGCCAAGACTGAGAAAGATGCTCAGATCAAGTTGAGCATGTACGACCCCTACGA 1634
|||| |||||||||||||||||||||||||||||||||||||| | || ||||| || ||
Sbjct 1826 ATATATAGCCAAGACTGAGAAAGATGCTCAGATCAAGTTGAGCCTCTATGACCCATATGA 1885
Query 1635 GTTCCATC-TTGTGAACCCTA-CTCGTCGGTCTCGTTTAGGGAACCCGGCTGGTTACAAG 1692
||||| | |||||||||| | | || ||||| |||| |||||||||||||||| |
Sbjct 1886 ATTCCA-CATTGTGAACCCGAAC-CGAAAATCTCGGGTAGGAAACCCGGCTGGTTACAGG 1943
Query 1693 CTTGTGCCTGGTGGTAATGCTGCAAGTTTGCTTGATCATGATGATCCGCCACAAATTAGA 1752
| || || ||||||||||| || |||||||||||||| |||||||| || |||||| ||
Sbjct 1944 ATCGTACCGGGTGGTAATGCAGCGAGTTTGCTTGATCACGATGATCCTCCTCAAATTCGA 2003
Query 1753 GGGGCTTTCACAAACAACCGGATATGGGTGACACGGTATAACCGGTCAGAGCAATGGGCT 1812
|| || ||||| || || | |||||||||||| | |||||||||||||| |||| ||
Sbjct 2004 GGTGCATTCACTAATAATCAGATATGGGTGACTCCATATAACCGGTCAGAACAATATGCC 2063
Query 1813 GGTGGCCTTTTGATGTACCAGAGCCGTGGTGAAGACACGCTACAAGTTTGGTCGGACCGG 1872
|| || || | || |||||||||| ||||| ||||| |||||||||||||| ||||||
Sbjct 2064 GGAGGAGTTCTAATTTACCAGAGCCAAGGTGATGACACACTACAAGTTTGGTCAGACCGG 2123
Query 1873 GATCGTTCGATTGAGAACGAGGACATAGTGTTGTGGTATACATTAGGGTTCCATCACGTA 1932
|| |||||||| || ||| |||||||||| ||||||| ||| |||||||||||||||||
Sbjct 2124 GACCGTTCGATCGAAAACAAGGACATAGTACTGTGGTACACACTAGGGTTCCATCACGTA 2183
Query 1933 CCGTGCCAAGAAGACTT-TCCGGTTATGCCAAC-GATAGCAGCTAGCTTTGAACTTAAAC 1990
|| || |||||||| || ||| ||||||||||| | | || |||||||||||||||||||
Sbjct 2184 CCTTGTCAAGAAGA-TTATCCAGTTATGCCAACCGTT-GCGGCTAGCTTTGAACTTAAAC 2241
Query 1991 CGGTTAATTTCTTTGAATCAAACCCGATTCTTGGGATCA-CACCTTTCTTCGAGAAAGAC 2049
| | |||||||||||||| || |||||||||||| || | ||||||||||| ||||||
Sbjct 2242 CAGCAAATTTCTTTGAATCCAATCCGATTCTTGGG-TCTGCTCCTTTCTTCGAAAAAGAC 2300
Query 2050 TTGCAAGTCTGT 2061
|| | ||||||
Sbjct 2301 TTACCGGTCTGT 2312
> AT3G43820.1 | Symbols: | pseudogene, copper amine oxidase protein
family, similar to SP|Q43077 Amine oxidase (copper-containing)
precursor (EC 1.4.3.6) {Pisum sativum}; contains Pfam
profile PF01179: Copper amine oxidase, enzyme domain; blastp
match of 57% identity and 2.6e-48 P-value to GP|5733089|gb|AAD49420.1|AF172681_1|AF172681
amine oxidase {Canavalia lineata}
| chr3:15668523-15669776 REVERSE LENGTH=1254
Length=1254
Score = 427 bits (231), Expect = 2e-118
Identities = 358/416 (86%), Gaps = 22/416 (5%)
Strand=Plus/Plus
Query 1360 TACACAAACGTACAAGACTTGGGTGAGAAAGAAGCTGATTCTGGACCTTTGATCTCAGAA 1419
|||||||||||||||||||||||||||||||| ||| ||||||||| |||||||| | ||
Sbjct 406 TACACAAACGTACAAGACTTGGGTGAGAAAGACGCTAATTCTGGACTTTTGATCTAAAAA 465
Query 1420 AACGTTATAGGAGTCGTCCATGATCATTTCATAACGTTTCATCTAGACATAGACATTGAC 1479
|||||||||||||| ||||| | | || | |||||||||||||| |||||||||
Sbjct 466 AACGTTATAGGAGTGGTCCACG---A--TC---A--TTTCATCTAGACATGGACATTGAC 515
Query 1480 GAGCCCGCCAACAACTCCTTCGTCAAGGTTCATCTAGAGAAGCAGAGACTTCCGCCTGGT 1539
| ||| || || |||| | ||| ||| ||||||||||||||||||||||||| |||||
Sbjct 516 GGGCCAGCTAAGAACT-C--CGTTAAGATTCATCTAGAGAAGCAGAGACTTCCACCTGGA 572
Query 1540 GGATCAAGGAGAAAGAGTTACTTGAAGGTCAAGAAATATGTAGCCA--AG-ACTGAGAAA 1596
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 573 AAATCAAGGAGAAAGAGTTACTTGAAGGTCAAGAAATATGTAGCCTGCAGGACTGATAAA 632
Query 1597 GATGCTCAGATCAAGTTGAGCATGTACGACCCCTACGAGTTCCATCTTGTGAACCCTA-C 1655
||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||| |
Sbjct 633 GATGCTCAGATAAAGTTGAGCCTGTACGACCCTTACGAGTTCCATCTTGTGAACCCTAAC 692
Query 1656 TCGTCGGTCTC-GTTTAGGGAACCCGGCTGGTTACAAGCT-TGTGCCTGGTGGTAATGCT 1713
|| | |||| ||| ||| ||| ||| ||||||||||| | | ||| |||||||||||
Sbjct 693 -CGGCAGTCTTAGTTAAGG-AACTTGGCCGGTTACAAGCTCT-TACCTAGTGGTAATGCT 749
Query 1714 GCAAGTTTGCTTGATCATGATGATCCGCCACAAATTAGAGGGGCTTTCACAAACAA 1769
|||||||| || ||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 750 GCAAGTTTACTCGATAATGATGATCCGCCACATATTAGAGGGGCTTTCACAAACAA 805
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102308710710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5