BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg347481 Length=1155 Score E Sequences producing significant alignments: (Bits) Value AT3G43990.1 | Symbols: | Bromo-adjacent homology (BAH) domain-... 1485 0.0 > AT3G43990.1 | Symbols: | Bromo-adjacent homology (BAH) domain-containing protein | chr3:15782538-15785178 REVERSE LENGTH=1143 Length=1143 Score = 1485 bits (804), Expect = 0.0 Identities = 1045/1158 (90%), Gaps = 29/1158 (3%) Strand=Plus/Plus Query 1 ATGTCGATCCATCAAGCGAATGAAGTGGTTGTGAGCGAAGGTGAAGACAATGTTCCATTG 60 ||||| ||||| ||| |||||||||||||||| | | | ||||||||||||||| Sbjct 1 ATGTCCATCCAGCAATCGAATGAAGTGGTTGT----G-A--T--TGACAATGTTCCATTG 51 Query 61 TCGACGTTAAGAACCAAAGACACAAAGTTAAAG--CAGAAGAG-GGAGGAGAGTAAGGAC 117 ||||||||||| |||||||| || | | |||| ||||| | ||||||||||||||| Sbjct 52 TCGACGTTAAGCACCAAAGAAACGACGACAAAGAAGAGAAGGGTGGAGGAGAGTAAGGAA 111 Query 118 ATGCAAGTGAAGAAGAAAGCAAAGTTCGA-CTGGAGACCGAGTGATTCTTGTGCGAAGTC 176 ||||||||||||||||||||||||||||| | ||||||||| || |||||||||||| Sbjct 112 ATGCAAGTGAAGAAGAAAGCAAAGTTCGAGC-AGAGACCGAGCGA---TTGTGCGAAGTC 167 Query 177 AATTGGCAAACCGATTAAGTTTACTGGTAAGGGAGGAAACAAGAAATGTCATTACGAGAC 236 |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 168 AATTGGTAAACCGATTAAGTTTACTGGTAAGGGACAAAACAAGAAATGTCATTACGAGAC 227 Query 237 ATTCGAGTTTCATGGCAAAGAATATAGACTGGAAGACTTTGTGGAATTGGT-TCCAGAAA 295 ||||||||||||||||||| ||||||||||| ||||||||||| ||| || ||||||| Sbjct 228 ATTCGAGTTTCATGGCAAACAATATAGACTGAAAGACTTTGTGCTATT-GTATCCAGAAG 286 Query 296 ACCCA-AACCAAAAGGAATACATAGCGATCATCAAGGATATTTATAT-ACGAGAAAAAGA 353 | | | || |||||||||||||| ||||||||||||||||||||| | || ||||||||| Sbjct 287 A-CAATAAACAAAAGGAATACATTGCGATCATCAAGGATATTTAT-TCACAAGAAAAAGA 344 Query 354 TGGACTTGTGAAAATGTTGGTGCAATGGTTTTACCGCAGAGAAGATATCGAAGAAAAAGA 413 |||||||||||| ||| |||||| ||||||||||| ||||||||||||||||||||| | Sbjct 345 TGGACTTGTGAAGATGGAGGTGCAGTGGTTTTACCGTAGAGAAGATATCGAAGAAAAACA 404 Query 414 TGTT-GGAGAGTGGAAATCCGAAGACTCAAGCGAAATTTTCTTCAGTTTCCATTGTGATG 472 | || ||| |||||||| ||||| || |||| ||||||||||||||||| |||||||||| Sbjct 405 TTTTGGGA-AGTGGAAAACCGAAAACCCAAGGGAAATTTTCTTCAGTTTTCATTGTGATG 463 Query 473 AAGTGTGTGCTGAATCTGTGAAGTACAAGTGTTTTGTGTATTTCGTGCCGGATGATAAGC 532 |||||| |||||||||||| |||||||||||| |||| ||||||||||| |||||||||| Sbjct 464 AAGTGTTTGCTGAATCTGTCAAGTACAAGTGTCTTGTATATTTCGTGCCAGATGATAAGC 523 Query 533 AAGTTCCAAACCGTATTCAGTC-TTCCGGCTTCGTCGTGCAAATGGTTTATGATAATGTT 591 || | |||||||||||||| || |||||||||| |||||||||||||||||||||||||| Sbjct 524 AAATCCCAAACCGTATTCA-TCATTCCGGCTTCATCGTGCAAATGGTTTATGATAATGTT 582 Query 592 CACAATGAGATGATGAAGTTCTCTGATGAAAGCTTTGACGAGGAGCAAAAGTTTGAGATT 651 | ||| || ||| |||||||||| ||||| ||||||| ||||||||||||||||||||| Sbjct 583 CGCAAAAAGGTGAGGAAGTTCTCTCATGAAGGCTTTGAAGAGGAGCAAAAGTTTGAGATT 642 Query 652 GATATTCTTGTGGCAAGGACGATTTCGAGAATTGGTGATCTCGTTGACGTTGAGAAAGTC 711 ||||| |||||||||| |||| ||||||||||||| |||||||||||||||||||||| Sbjct 643 GATATGCTTGTGGCAAAGACGGTTTCGAGAATTGGAAATCTCGTTGACGTTGAGAAAGTT 702 Query 712 CAAATGACTACAATTCCGAGGCGTAAAAG-ATTAGTTAGGAAGTGTGAGAGAATGAGTTC 770 |||| |||||| ||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 703 CAAACGACTACGATTCCGAGGCGTAAAAGAATT-GTTAGGAAGTGTGAGAGAATGAGTTC 761 Query 771 TAGGCCGATCTCGGACAAGTTAGAGTCGTTACCATCCAGTGATTTGGATCGTGACAAGAT 830 || ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 762 TAACCCGATCTCGGAGAAGTTAGAGTCGTTACCATCCAGTGCTTTGGATCGTGACAAGAC 821 Query 831 ATTGGTGGAGCTTTTAGAAGTAGTACTTAAGAACTTGTGTTCTGAAAGTACGGGGACCAC 890 |||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 822 ATTGTTGGAGCTTTTAGAAGTAGTACTTAAGAACATGTGTTGTGAAAGTACGGGGACCAG 881 Query 891 CCGAAAGGATGTTGTTCAGGTGGTACTTGCTCTTGAGGAGGCTTTATATGATTCTTTCGC 950 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 882 TCGAAAGGATGTTGTTCAGATGGTACTTGCTCTTGAGGAGGCTTTATATGATTCTTTCGC 941 Query 951 AGATGATATACCAAAGTATAATTACAAGTTGGAGCTTCTGGTCAAGAGACTCAAGAATTC 1010 |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 942 GGATGATGTACCAAAGTATAATTACAAGTTGGAGCTTCTGGTTGAGAGACTCAAGAATTC 1001 Query 1011 AAGAGTGCTAGCTAGAGGACTTCTCAGTGGCAAATTAAAACCTGAACAAGCTATAAAGAT 1070 |||||||||||||| | ||||||||| |||| |||||||||||||||||||||||||||| Sbjct 1002 AAGAGTGCTAGCTACAAGACTTCTCAATGGCGAATTAAAACCTGAACAAGCTATAAAGAT 1061 Query 1071 GGCCGACTTCGAAGAACCAATATTGGTGGAAGATGTTGCATCCACCTCCAAAAATGTTGG 1130 |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 1062 GGCCGACTTCGAAGAACCAAAATTGGTGGAAGATGTTGCATCCACCTCCGAAAATGTTGG 1121 Query 1131 GCACAAAGATTGTCTCGA 1148 |||||||||||||||||| Sbjct 1122 GCACAAAGATTGTCTCGA 1139 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56676415305 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5