BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347481
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43990.1 | Symbols: | Bromo-adjacent homology (BAH) domain-... 1485 0.0
> AT3G43990.1 | Symbols: | Bromo-adjacent homology (BAH) domain-containing
protein | chr3:15782538-15785178 REVERSE LENGTH=1143
Length=1143
Score = 1485 bits (804), Expect = 0.0
Identities = 1045/1158 (90%), Gaps = 29/1158 (3%)
Strand=Plus/Plus
Query 1 ATGTCGATCCATCAAGCGAATGAAGTGGTTGTGAGCGAAGGTGAAGACAATGTTCCATTG 60
||||| ||||| ||| |||||||||||||||| | | | |||||||||||||||
Sbjct 1 ATGTCCATCCAGCAATCGAATGAAGTGGTTGT----G-A--T--TGACAATGTTCCATTG 51
Query 61 TCGACGTTAAGAACCAAAGACACAAAGTTAAAG--CAGAAGAG-GGAGGAGAGTAAGGAC 117
||||||||||| |||||||| || | | |||| ||||| | |||||||||||||||
Sbjct 52 TCGACGTTAAGCACCAAAGAAACGACGACAAAGAAGAGAAGGGTGGAGGAGAGTAAGGAA 111
Query 118 ATGCAAGTGAAGAAGAAAGCAAAGTTCGA-CTGGAGACCGAGTGATTCTTGTGCGAAGTC 176
||||||||||||||||||||||||||||| | ||||||||| || ||||||||||||
Sbjct 112 ATGCAAGTGAAGAAGAAAGCAAAGTTCGAGC-AGAGACCGAGCGA---TTGTGCGAAGTC 167
Query 177 AATTGGCAAACCGATTAAGTTTACTGGTAAGGGAGGAAACAAGAAATGTCATTACGAGAC 236
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 168 AATTGGTAAACCGATTAAGTTTACTGGTAAGGGACAAAACAAGAAATGTCATTACGAGAC 227
Query 237 ATTCGAGTTTCATGGCAAAGAATATAGACTGGAAGACTTTGTGGAATTGGT-TCCAGAAA 295
||||||||||||||||||| ||||||||||| ||||||||||| ||| || |||||||
Sbjct 228 ATTCGAGTTTCATGGCAAACAATATAGACTGAAAGACTTTGTGCTATT-GTATCCAGAAG 286
Query 296 ACCCA-AACCAAAAGGAATACATAGCGATCATCAAGGATATTTATAT-ACGAGAAAAAGA 353
| | | || |||||||||||||| ||||||||||||||||||||| | || |||||||||
Sbjct 287 A-CAATAAACAAAAGGAATACATTGCGATCATCAAGGATATTTAT-TCACAAGAAAAAGA 344
Query 354 TGGACTTGTGAAAATGTTGGTGCAATGGTTTTACCGCAGAGAAGATATCGAAGAAAAAGA 413
|||||||||||| ||| |||||| ||||||||||| ||||||||||||||||||||| |
Sbjct 345 TGGACTTGTGAAGATGGAGGTGCAGTGGTTTTACCGTAGAGAAGATATCGAAGAAAAACA 404
Query 414 TGTT-GGAGAGTGGAAATCCGAAGACTCAAGCGAAATTTTCTTCAGTTTCCATTGTGATG 472
| || ||| |||||||| ||||| || |||| ||||||||||||||||| ||||||||||
Sbjct 405 TTTTGGGA-AGTGGAAAACCGAAAACCCAAGGGAAATTTTCTTCAGTTTTCATTGTGATG 463
Query 473 AAGTGTGTGCTGAATCTGTGAAGTACAAGTGTTTTGTGTATTTCGTGCCGGATGATAAGC 532
|||||| |||||||||||| |||||||||||| |||| ||||||||||| ||||||||||
Sbjct 464 AAGTGTTTGCTGAATCTGTCAAGTACAAGTGTCTTGTATATTTCGTGCCAGATGATAAGC 523
Query 533 AAGTTCCAAACCGTATTCAGTC-TTCCGGCTTCGTCGTGCAAATGGTTTATGATAATGTT 591
|| | |||||||||||||| || |||||||||| ||||||||||||||||||||||||||
Sbjct 524 AAATCCCAAACCGTATTCA-TCATTCCGGCTTCATCGTGCAAATGGTTTATGATAATGTT 582
Query 592 CACAATGAGATGATGAAGTTCTCTGATGAAAGCTTTGACGAGGAGCAAAAGTTTGAGATT 651
| ||| || ||| |||||||||| ||||| ||||||| |||||||||||||||||||||
Sbjct 583 CGCAAAAAGGTGAGGAAGTTCTCTCATGAAGGCTTTGAAGAGGAGCAAAAGTTTGAGATT 642
Query 652 GATATTCTTGTGGCAAGGACGATTTCGAGAATTGGTGATCTCGTTGACGTTGAGAAAGTC 711
||||| |||||||||| |||| ||||||||||||| ||||||||||||||||||||||
Sbjct 643 GATATGCTTGTGGCAAAGACGGTTTCGAGAATTGGAAATCTCGTTGACGTTGAGAAAGTT 702
Query 712 CAAATGACTACAATTCCGAGGCGTAAAAG-ATTAGTTAGGAAGTGTGAGAGAATGAGTTC 770
|||| |||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 703 CAAACGACTACGATTCCGAGGCGTAAAAGAATT-GTTAGGAAGTGTGAGAGAATGAGTTC 761
Query 771 TAGGCCGATCTCGGACAAGTTAGAGTCGTTACCATCCAGTGATTTGGATCGTGACAAGAT 830
|| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 762 TAACCCGATCTCGGAGAAGTTAGAGTCGTTACCATCCAGTGCTTTGGATCGTGACAAGAC 821
Query 831 ATTGGTGGAGCTTTTAGAAGTAGTACTTAAGAACTTGTGTTCTGAAAGTACGGGGACCAC 890
|||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 822 ATTGTTGGAGCTTTTAGAAGTAGTACTTAAGAACATGTGTTGTGAAAGTACGGGGACCAG 881
Query 891 CCGAAAGGATGTTGTTCAGGTGGTACTTGCTCTTGAGGAGGCTTTATATGATTCTTTCGC 950
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 882 TCGAAAGGATGTTGTTCAGATGGTACTTGCTCTTGAGGAGGCTTTATATGATTCTTTCGC 941
Query 951 AGATGATATACCAAAGTATAATTACAAGTTGGAGCTTCTGGTCAAGAGACTCAAGAATTC 1010
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 942 GGATGATGTACCAAAGTATAATTACAAGTTGGAGCTTCTGGTTGAGAGACTCAAGAATTC 1001
Query 1011 AAGAGTGCTAGCTAGAGGACTTCTCAGTGGCAAATTAAAACCTGAACAAGCTATAAAGAT 1070
|||||||||||||| | ||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1002 AAGAGTGCTAGCTACAAGACTTCTCAATGGCGAATTAAAACCTGAACAAGCTATAAAGAT 1061
Query 1071 GGCCGACTTCGAAGAACCAATATTGGTGGAAGATGTTGCATCCACCTCCAAAAATGTTGG 1130
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1062 GGCCGACTTCGAAGAACCAAAATTGGTGGAAGATGTTGCATCCACCTCCGAAAATGTTGG 1121
Query 1131 GCACAAAGATTGTCTCGA 1148
||||||||||||||||||
Sbjct 1122 GCACAAAGATTGTCTCGA 1139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56676415305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5