BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347486
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44060.1 | Symbols: | F-box/RNI-like superfamily protein | ... 405 4e-112
AT3G44096.1 | Symbols: | transposable element gene | chr3:1585... 287 1e-76
AT3G42770.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 230 2e-59
AT3G44180.1 | Symbols: | syntaxin-related family protein | chr... 178 9e-44
AT3G44810.1 | Symbols: | F-box family protein | chr3:16358496-... 158 1e-37
> AT3G44060.1 | Symbols: | F-box/RNI-like superfamily protein
| chr3:15824938-15826391 REVERSE LENGTH=1284
Length=1284
Score = 405 bits (219), Expect = 4e-112
Identities = 350/414 (85%), Gaps = 6/414 (1%)
Strand=Plus/Plus
Query 532 GTGATTTCTATATGCTGCAATGGTGGATTACCGGTGTTCAACAACCTCGTTGATTTAGTG 591
|||||||| ||| |||||| |||||| |||| ||||||||||||| ||||| ||||||
Sbjct 868 GTGATTTCCGTATACTGCAAAGGTGGACTACCAATGTTCAACAACCTTGTTGAGTTAGTG 927
Query 592 TTTTCCG-GTACAAAAAG-AGGTTGGAAACAGCTTTTGCCACTTCTGCTAGAGCGTTCTC 649
|||| || ||| |||| | |||||||| | |||| |||| |||||||||||| |||||
Sbjct 928 TTTT-CGAGTA-AAAAGGAAGGTTGGAGAGTGCTTCTGCCTCTTCTGCTAGAGAATTCTC 985
Query 650 CGAA-CTTAAAAAATCTGGTTCTCTCGGGTCTACATAATTACACATTTGGACGAAGACAT 708
| || ||| ||| |||||||||||||| ||| ||| ||||||||||||||||||||||
Sbjct 986 CAAACCTT-GAAACTCTGGTTCTCTCGGATCTGCATCGTTACACATTTGGACGAAGACAT 1044
Query 709 CGGTTTGTAGGGATTCAAATACCCTTGAATATCCAAATAAAGATGCTTAGTATCAAGCAA 768
|||||||||||||||| ||| ||| ||||| |||||||||| | || |||||| |||
Sbjct 1045 CGGTTTGTAGGGATTCCAATTCCCCCGAATAACCAAATAAAGGTACTGCGTATCATGCAG 1104
Query 769 TATCATGGAAGTGCAACCGTGCTGAAACACATTAGCCATTTCTTACTGAATATGGAATAT 828
|| || ||||||||||| || |||||||||||||| |||||||||||||||||||| | |
Sbjct 1105 TACCAAGGAAGTGCAACTGTACTGAAACACATTAGTCATTTCTTACTGAATATGGATTGT 1164
Query 829 CTTGAAGTGGTGAAAGTTTACGTTGCAGCTGAAATGGATGACACCAAAAAGATGCAACTC 888
|||||||| ||||||| |||||||||||| | |||||||| ||||||||||||| |||
Sbjct 1165 CTTGAAGTTATGAAAGTCAACGTTGCAGCTGCATTGGATGACCCCAAAAAGATGCAGCTC 1224
Query 889 ACAGAGGCTCTGTTGAAGTTTCCAACAGCTTCATCCAAGCTCGAGATACAGGTC 942
||||||| |||||| ||| |||| |||||||||| ||||||| |||| || |||
Sbjct 1225 ACAGAGGATCTGTTAAAGCTTCCCACAGCTTCATGCAAGCTCAAGATTCAAGTC 1278
Score = 250 bits (135), Expect = 2e-65
Identities = 345/441 (78%), Gaps = 36/441 (8%)
Strand=Plus/Plus
Query 67 CCATCCCAAGTCTTCACCAGCACAACGCTGGTTAATCTGTCACTGGGAACAGA-ACAATA 125
||||| |||| |||| |||| |||| |||||||| |||||| ||||| | || || |||
Sbjct 364 CCATCTAAAGTTTTCAACAGCTCAACACTGGTTAAGCTGTCATTGGGATC-GAGACTATA 422
Query 126 CATTG---ATAGCTTTT-CTGCGAATACATCTCTCCCAGCACTAAAGGTTCTCCTCCTTG 181
| || | || |||| || || |||||||||||||||||||||||||||| |||||||
Sbjct 423 C--TGCCCA-AG-TTTTCCTCCGGATACATCTCTCCCAGCACTAAAGGTTCTGCTCCTTG 478
Query 182 ATTCAATCT-GTTTTACAG-ATAATCAATTGT-TAAATGTATTTCTCACTGCTTGCCCTG 238
||||||||| |||| | | || ||||||| | ||| ||| |||||| |||| |||||||
Sbjct 479 ATTCAATCTTGTTT--CGGGATGATCAATTATCTAA-TGTGTTTCTCGCTGCATGCCCTG 535
Query 239 CACTTGAGGACTTAACGATACATCACGA-GAAAAATGAAGTACAATCATACGTCATATCT 297
|||||||||||||||| ||||||||| | | | | | || ||| |||||||||
Sbjct 536 CACTTGAGGACTTAACCATACATCAC-ACG-----T-A--T-CACCCATGCGTCATATCC 585
Query 298 AGCAAAACCATCAAAAAACTCTCTGTTACCATTAA-ATTTAATAATTATCTTGATTCTCC 356
||||||| ||| || ||||| || ||| | |||| | | || |||| || | |
Sbjct 586 AGCAAAAGCATTAAGAAACTTTCACTTAGCGTTAACAGTGGTTA-TTATGGTGCTGGTTA 644
Query 357 CGTCATTAT-ATCAATTGACACACCTAGTGTTGTCGACCTCTACTACTCTGATTATCGTC 415
| ||| | | || ||||||| || |||||||||||||||||||||||||||| | ||
Sbjct 645 --T-ATTCTTA-CACTTGACACGCCAAGTGTTGTCGACCTCTACTACTCTGATTCCCCTC 700
Query 416 GGCATAAATCTCCACGTTGTCAATTGGATTCACTTGCCAAAGCTACATTGGACCTTCATT 475
||||||| |||||| || ||| || ||||||||||| |||| |||||||||||||||||
Sbjct 701 GGCATAACGCTCCACTTTTTCATTTAGATTCACTTGCGAAAGTTACATTGGACCTTCATT 760
Query 476 TCTTAGAAAA-AGACAAGCGC 495
|| ||||||| | |||| |||
Sbjct 761 TCATAGAAAATA-ACAATCGC 780
> AT3G44096.1 | Symbols: | transposable element gene | chr3:15859368-15863166
REVERSE LENGTH=3799
Length=3799
Score = 287 bits (155), Expect = 1e-76
Identities = 350/440 (80%), Gaps = 30/440 (7%)
Strand=Plus/Plus
Query 67 CCATCCCAAGTCTTCACCAGCACAACGCTGGTTAATCTGTCACT-GGGAACAGA-ACAAT 124
||||||||||| |||||||||||||| |||||||| |||||| | ||||| | | |||
Sbjct 259 CCATCCCAAGTATTCACCAGCACAACACTGGTTAAGCTGTCATTGGGGAA-A-ACCCAAC 316
Query 125 ACAT-TGAT-AGCTTTTCTGC-GAATACATCTCTCCCAGCACTAAAGGTTCTCCTCCTTG 181
|||| | || || |||||| | | ||||||||||||||| ||||||||||||||||||||
Sbjct 317 ACATCT-ATGAG-TTTTCTCCTG-ATACATCTCTCCCAGTACTAAAGGTTCTCCTCCTTG 373
Query 182 ATTCAATCT-GTTTTACAGATAATCAATT-GTTAAATGTATTTCTCACTGCTTGCCCTGC 239
|||| |||| ||||| | || ||| ||| | |||||||||| || |||||||||||||
Sbjct 374 ATTCTATCTGGTTTTGGAAAT-ATCCATTAG-CAAATGTATTTTTCGCTGCTTGCCCTGC 431
Query 240 ACTTGAGGACTTAACGATACATCACGAGAAAAATGAAGTAC-AA-T-CATACGTCATATC 296
||||||||||||||| |||| | || | | || | || | || | ||||||| |||||
Sbjct 432 ACTTGAGGACTTAACCATACGTTAC-A-ATAATTTTAG-AGGAAGTTCATACGTTATATC 488
Query 297 TAGCAAAACCATCAAAAAACTCTCTGTTACCATTAA-ATTTAATAATTATCTTGAT--TC 353
||||||| ||| || |||||||| |||| || || | | | | |||| || | ||
Sbjct 489 CAGCAAAAGCATTAAGAAACTCTCAGTTATCAATAGCAGT-AGTTGTTATGATGGTCATC 547
Query 354 -TCCCGTCATTATATCAATTGACACACCTAGTGTTGTCGACCTCTACTACTCTGATTATC 412
| ||| |||| | | |||| ||||| | |||||||||| |||||||||||| || ||
Sbjct 548 ATAGCGTTATTACA-C--TTGATACACCCAATGTTGTCGACTTCTACTACTCTGGTTTTC 604
Query 413 GTCGGCATAAATCTCCACGTTGTCAATTG-GATTCACTTGCCAAAGCTACATTGGACCTT 471
|| || |||| ||||| |||| |||| ||||||||||||||||||||| ||||||||
Sbjct 605 TTCAGCCTAAAGATCCACATTGT-AATTTAGATTCACTTGCCAAAGCTACACTGGACCTT 663
Query 472 CATTTCTTAGAAAAAGACAA 491
|||||||||||| | |||||
Sbjct 664 CATTTCTTAGAAGATGACAA 683
Score = 276 bits (149), Expect = 3e-73
Identities = 210/239 (88%), Gaps = 6/239 (3%)
Strand=Plus/Plus
Query 687 TTACACATTTGGACGAAGACATCGGTTTGTAGGGATTCAAATACCCTTGAATATCCAAAT 746
|||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 1438 TTACACTTTTGGACGAAGACATCGGTTTGTAGGGATTCAAATTCCCCCAAATAACCAAAT 1497
Query 747 AAAGATGCTTA-GTATCAAGCAATATCATGGAAGTGCAACCGTGCTGAAACACATTAGCC 805
||||||| || |||||| ||| || || ||||||||||||||| |||||||||||||||
Sbjct 1498 AAAGATG-TTGCGTATCATGCAGTACCAAGGAAGTGCAACCGTGTTGAAACACATTAGCC 1556
Query 806 ATTTCTTACTGAATATGGAATATCTTGAAGTGGTGAAAGTTTACGTTGCAGCTGA-AATG 864
|||||||| |||||||||| | ||||||||| ||||||||||| |||||| || | ||||
Sbjct 1557 ATTTCTTAATGAATATGGAGTGTCTTGAAGTTGTGAAAGTTTATGTTGCACCT-ACAATG 1615
Query 865 GATGACAC-CAAAAAGATGCAACTCACAGAGGCTCTGTTGAAGTTTCCAACAGCTTCAT 922
|||||| | |||||||||||| |||||||||| |||||||||| |||| |||||||||
Sbjct 1616 GATGAC-CTCAAAAAGATGCAGCTCACAGAGGATCTGTTGAAGCTTCCCGCAGCTTCAT 1673
> AT3G42770.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr3:14867122-14870083 FORWARD LENGTH=1599
Length=1599
Score = 230 bits (124), Expect = 2e-59
Identities = 274/343 (80%), Gaps = 23/343 (7%)
Strand=Plus/Plus
Query 150 ATCTCTCCCAGCACTAAAGGTTCTCCTCCTTGATTCAATCT-GTTTTACAGATAATCAAT 208
|||||||||| |||||||||||||| ||||||||||||| | |||| | || | |||||
Sbjct 468 ATCTCTCCCATCACTAAAGGTTCTCTTCCTTGATTCAATTTGGTTTGA-AGTTCCTCAAT 526
Query 209 TGTTAAATGTATTTCTCACTGCTTGCCCTGCACTTGAGGACTTAACGATACATCACGAGA 268
| || || |||||||||||||||||||||||||||| |||||||| ||| |||| ||
Sbjct 527 TCTT-AA--TATTTCTCACTGCTTGCCCTGCACTTGAAGACTTAACCATATATCAAAAGC 583
Query 269 AAAATGAAGTA-CAAT--CATA-CGTCATATCTAGCAAAACCATCAAAAAACTCTCTGTT 324
|| ||| ||| |||| | | ||||||||||||||||| || | ||||||||||
Sbjct 584 CTCATTCTGTAGGAATGCCATACCAT-ATATCTAGCAAAACCATTAAGAGACTCTCTGTT 642
Query 325 ACCAT-TAAATTTAATAATTATCTTGATTCTCCCGTCATTATATCAATTGACACACCTAG 383
||| | || || | | ||| | |||||| | | | ||| || | || ||||||| ||
Sbjct 643 ACC-TATACATGTGGTTATTTTGTTGATTAT---GGCCTTAAATTATTTAACACACCGAG 698
Query 384 TGTTGTCGACCTCTACTACTCTGATTATCGT-CGGCATAAATCTCCACGT-TGTCAATT- 440
|||||||||||||||||||||||||||| || || ||||| | ||||| | || ||||
Sbjct 699 TGTTGTCGACCTCTACTACTCTGATTAT-GTTCGACATAAGTATCCACATATG--AATTT 755
Query 441 GGATTCACTTGCC-AAAGCTACATTGGACCTTCATTTCTTAGA 482
|||||||||| || ||||||||| ||||| |||||||||||||
Sbjct 756 GGATTCACTT-CCTAAAGCTACACTGGACATTCATTTCTTAGA 797
> AT3G44180.1 | Symbols: | syntaxin-related family protein | chr3:15900795-15901716
FORWARD LENGTH=609
Length=609
Score = 178 bits (96), Expect = 9e-44
Identities = 110/117 (94%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 828 TCTTGAAGTGGTGAAAGTTTACGTTGCAGCTGAAATGGATGACACCAAAAAGATGCAACT 887
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 489 TCTTGAAGTGGTGAAAGTTTATGTTGCAGCTGAAATGGATGACACCAAAAAGATGCAACT 548
Query 888 CACAGAGGCTCTGTTGAAGTTTCCAACAGCTTCATCCAAGCTCGAGATACAGGTCAT 944
|||||||| ||||||||||||||| |||||||||| |||||| ||||||| |||||
Sbjct 549 CACAGAGGATCTGTTGAAGTTTCCTGCAGCTTCATCTAAGCTCAAGATACAAGTCAT 605
Score = 147 bits (79), Expect = 3e-34
Identities = 170/213 (80%), Gaps = 9/213 (4%)
Strand=Plus/Plus
Query 286 TACGTCATATCTAGCAAAACCATCAAAAAACTCTCTGTTACC--ATT-AAATTTAATAAT 342
||||||||||| | ||||||||| || |||||||| |||||| || || | | | ||
Sbjct 58 TACGTCATATCCAACAAAACCATTAAGAAACTCTCGGTTACCTGTTTGAACTGTCGTTAT 117
Query 343 TAT-CT--TGATTCTCCCGTCATTATATCAATTGACACACCTAGTGTTGTCGACCTCTAC 399
||| | || ||| | | | ||| ||| |||||||||| | |||||| || || ||
Sbjct 118 TATGGTACTG-TTC-CTAG-AAATATTTCATTTGACACACCGAATGTTGTTGATTTCAAC 174
Query 400 TACTCTGATTATCGTCGGCATAAATCTCCACGTTGTCAATTGGATTCACTTGCCAAAGCT 459
||||||||||||| ||| | | ||||||||| ||||| |||||||||||||||||||||
Sbjct 175 TACTCTGATTATCTTCGTCGTGAATCTCCACAATGTCACTTGGATTCACTTGCCAAAGCT 234
Query 460 ACATTGGACCTTCATTTCTTAGAAAAAGACAAG 492
|||||||||||||||||||| ||| | ||||||
Sbjct 235 ACATTGGACCTTCATTTCTTCGAAGATGACAAG 267
> AT3G44810.1 | Symbols: | F-box family protein | chr3:16358496-16359983
REVERSE LENGTH=1347
Length=1347
Score = 158 bits (85), Expect = 1e-37
Identities = 332/445 (75%), Gaps = 42/445 (9%)
Strand=Plus/Plus
Query 532 GTGATTTC-TATATGCTGCAATGGTGGATTACCGGTGTTCAACAACCTCGTTGATTTAGT 590
|||||||| | ||||||||| || || | || ||||||| |||||| ||| ||||||
Sbjct 913 GTGATTTCGCA-ATGCTGCAAAGGCGGGCTCCCCATGTTCAAAAACCTCCTTGTTTTAGT 971
Query 591 GTTTTCCGGT-ACA--AAAAGAGGTTGGAAACAGCTTT-TGCCACTTCTGCTAGAGCGTT 646
||||| ||| ||| || ||| ||||||| | ||| | |||||||||||||||| ||
Sbjct 972 GTTTTTGGGTAACACTGAACGAGTTTGGAAAGTG-TTTCTTCCACTTCTGCTAGAGCATT 1030
Query 647 CTCCGAACTTAA-AAAATCTG-GT-TC---TCTCGGGTC-TACATAATTACA----C--- 692
|||||||| ||| ||||| || || || |||| || || ||| || || |
Sbjct 1031 CTCCGAACCTAACAAAAT-TGTGTCTCGAGTCTCTCTTCTTA-ATACTT-CAGGGTCTGT 1087
Query 693 AT-TTGG-AC-GAAG-ACATCG-GTTTGTA-GGGATTCAAATACCCTTGAATATCCAAA- 745
|| ||| || || | | || | ||||| | | ||||| || ||| || || ||||
Sbjct 1088 ATCATGGCACAGATGAAGAT-GAGTTTG-ATGAAATTCACATTCCCCGGAGTA-ACAAAG 1144
Query 746 TAAAGATGCTT-AGTATCA-AGCAATATCATGGAAGTGCAACCGTGCTGAAACACATTAG 803
| || ||| || |||||| | || | ||| |||| || || || |||||||||||||||
Sbjct 1145 TTAACATG-TTGCGTATCATA-CAGTGTCAAGGAACTGAAAACGAGCTGAAACACATTAG 1202
Query 804 CCATTTCTTACTGAATATGGAATATCTTGAAGTGGTGAAAGTTTACGTTGCAGCTGA-AA 862
||||||||||||||| ||||| | |||| || ||||| |||| | || ||| || ||
Sbjct 1203 CCATTTCTTACTGAAAATGGAGTGTCTTCAATTGGTGCAAGTCAATTTTTCAGA-GACAA 1261
Query 863 TGGATGACACCAAAAAGATGCAACTCACAGAGGCTCTGTTGAAGTTTCCAACAGCTTCAT 922
| | |||| |||||||| ||||||||||||||| |||| ||||| |||| | |||||||
Sbjct 1262 TTGTTGACTCCAAAAAGGTGCAACTCACAGAGGATCTGATGAAGCTTCCCTCTGCTTCAT 1321
Query 923 CCAAGCTCGA-GATACAGGTCATTT 946
||| |||| | ||| || |||||||
Sbjct 1322 CCAGGCTC-ACGATGCAAGTCATTT 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46366117681
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5