BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347509
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49490.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 1866 0.0
AT1G49500.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 219 9e-56
> AT1G49490.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr1:18317563-18320106 REVERSE LENGTH=2544
Length=2544
Score = 1866 bits (1010), Expect = 0.0
Identities = 1192/1276 (93%), Gaps = 27/1276 (2%)
Strand=Plus/Plus
Query 211 TCAATAAAGTCGATCCCTAACCTCAAATTTGAAAATGATCGTCTCAAAAGAGCTTACATT 270
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 TCAATAAAGTTGAT-CCTAACCTCAAATTTGAAAATGATCGTCTCAAAAGAGCTTACATT 192
Query 271 GCTCTTCAAGCGTGGAAAAAAGCCATTTACTCGGACCCGTTTAAGACTACAGCCAATTGG 330
||||||||||| |||||||||||||||||||| || || ||||| ||||| |||||||||
Sbjct 193 GCTCTTCAAGCATGGAAAAAAGCCATTTACTCTGATCCATTTAAAACTACGGCCAATTGG 252
Query 331 GTTGGTTCTGATGTGTGTTCTTACAATGGAGTTTATTGTGCACCTGCTCTAGATGATGAT 390
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 253 GTTGGTTCTGATGTGTGTTCATACAATGGAGTTTATTGTGCACCTGCTCTAGATGATGAT 312
Query 391 AGCCTCACGGTCGTAGCTGGAGTTGATCTTAATCACGCGGATATAGCCGGACATTTACCA 450
|| ||||||||||||||||||||||| ||||| || || |||||||||||||||||||||
Sbjct 313 AGTCTCACGGTCGTAGCTGGAGTTGACCTTAACCATGCAGATATAGCCGGACATTTACCA 372
Query 451 CCAGAGCTTGGCCTTATAACGGACCTAGCTTTGTTTCACATCAATTCTAATCGGTTTTGT 510
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 373 CCAGAGCTTGGCCTTATGACGGACCTAGCTTTATTTCACATCAATTCGAATCGGTTTTGT 432
Query 511 GGGATTATTCCCAAAAGTTTATCGAAACTCGCTTTGATGTATGAATTCGATGTTAGCAAC 570
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 433 GGGATCATCCCCAAAAGTTTATCGAAACTCGCTTTGATGTACGAATTCGATGTTAGCAAC 492
Query 571 AATCGATTCGTTGGTCAGTTCCCTGAAGTTTCACTCTCGTGGCCTTCTTTGAAGTTTCTT 630
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 493 AATCGATTCGTTGGTCAGTTCCCTGAAGTTTCACTCTCATGGCCTTCTTTGAAGTTTCTT 552
Query 631 GATCTAAGATACAATGAATTCGAAGGAAGTTTGCCATCAGAGATCTTTGATAAAGATCTT 690
|||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 553 GATCTAAGATACAACGAATTTGAAGGAAGCTTGCCATCAGAAATCTTTGATAAAGATCTT 612
Query 691 GATGCAATCTTT-TTGAATAACAATCGGTTTGAATCGGTTATCCCGGGTACAATTGGGAA 749
|||||||| ||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 613 GATGCAAT-TTTCTTGAACAACAATCGGTTTGAATCGGTTATCCCCGGTACAATTGGGAA 671
Query 750 ATCGAAAGCATCGGTTGTGACATTCGCAAACAATAAATTCATTGGTTGTATCCCAAAATC 809
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 672 ATCGAAAGCATCGGTTGTGACATTCGCAAACAATAAATTCAGTGGTTGTATCCCAAAATC 731
Query 810 GATTGGTAATATGAAGAACCTCAATGAGATTGTCTTCACTGGAAACAATTTAACCGGTTG 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 GATTGGTAATATGAAGAACCTCAATGAGATTGTCTTCACTGGAAACAATTTAACCGGTTG 791
Query 870 TTTCCCAAACGAGATTGGTTTGCTTAACAATGTGACGGTGTTTGATGCGAGCAAGAACGG 929
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 792 TTTCCCAAACGAGATTGGTTTGCTTAACAATGTGACGGTGTTTGATGCAAGCAAGAACGG 851
Query 930 TTTTGTTGGTAGTTTACCGACAACATTGTCCGGTTTAGCTAGCGTTGAGCAGTTGGATTT 989
|||||| |||||||||||| |||| ||||||||||||||||||||||||||||| |||||
Sbjct 852 TTTTGTCGGTAGTTTACCGTCAACCTTGTCCGGTTTAGCTAGCGTTGAGCAGTTAGATTT 911
Query 990 ATCGCATAATAAGCTCACCGGATTTGTTGTCGACAAATTTTGCAAATTGCCTAATTTAGA 1049
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 912 ATCGCATAATAAGCTCACCGGATTTGTTGTTGACAAATTTTGCAAGTTGCCTAATTTGGA 971
Query 1050 GAGCTTCAAGTTTTCTTACAATTTTTTCAATGGAGAAGCTGAGAGCTGTATTCCAGGGAG 1109
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 972 CAGCTTCAAGTTTTCTTACAATTTTTTCAATGGAGAAGCTGAGAGCTGTGTTCCAGGGAG 1031
Query 1110 AAACAATGGGAAACAATTTGATGATACCAACAATTGCTTGCAGAATAGACCGAGTCAAAA 1169
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1032 AAACAATGGGAAACAATTTGATGATACCAACAATTGCTTGCAAAATAGACCGAGCCAAAA 1091
Query 1170 GCCTGCTAAGCAATGTTTGCCCGTGGTTAGTCGTCCCGTGGATTGTAGCAAGGACAAGTG 1229
||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 1092 GCCGGCTAAACAATGTTTGCCGGTGGTTAGTCGTCCTGTGGATTGTAGCAAGGACAAATG 1151
Query 1230 TTCTGGCGGTAGCAACGGTGGCTCTAGCCCATCACCAAATCCACCAAGGACGTCCGAGCC 1289
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 CTCTGGCGGTAGCAATGGTGGCTCTAGCCCATCACCAAATCCACCAAGGACGTCCGAGCC 1211
Query 1290 AAAGCCATCAAAACCAGAGCCGGTTGTGCCTAAGCCTAGTGAATCACCTaaaccggaacc 1349
||||||||||||||||||||||||| ||||||| |||||||| ||| | | ||
Sbjct 1212 AAAGCCATCAAAACCAGAGCCGGTTATGCCTAAACCTAGTGATTCA--T---C---AA-- 1261
Query 1350 acaaaaaccatcaaaaccccagacaccaaaaacaccagaacaaccatcacctaaaccTCA 1409
| | || | | || | | | ||||||||| |||||||| ||||||||||||||
Sbjct 1262 A-A----CC--CGAGAC---A--C-C-AAAAACACCTGAACAACCTTCACCTAAACCTCA 1307
Query 1410 GCCACCAAAGCATGAATCTCCTAAACCGGAAGAACCAGAAAACAAGCCCGAGCTACCAAA 1469
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1308 GCCACCAAAGCATGAATCTCCTAAACCGGAAGAACCGGAAAACAAGCATGAGCTACCAAA 1367
Query 1470 ACAAGAGGAGTCTCCT 1485
|||| |||||||||||
Sbjct 1368 ACAAAAGGAGTCTCCT 1383
> AT1G49500.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant
structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT3G19030.1);
Has 24 Blast hits to 24 proteins in 2 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:18321295-18322284
REVERSE LENGTH=990
Length=990
Score = 219 bits (118), Expect = 9e-56
Identities = 128/133 (96%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 1 ATGGAGATTTGCATCGAGTTGGTGAAATTGACAGTAGATTTCGTCGCCGCCGTTGCAGAA 60
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 121 ATGGAGATTTGCATCGAGTTGTTGAAATTGACCGTAGATTTCGTCGCCGCCGTTGCAGAA 180
Query 61 TCAATCGAAGTAGCTTTCCGTCATCGTCCTCCACCGGTGATTCAATATTCTCCGGTGATG 120
|||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 181 TCAATCGAAGTAGCTTTCCGCCATCGTCCTCCACCGGTGATTCAATATTCTTCAGTGATG 240
Query 121 TATGGTCGCCGGA 133
|||||||||||||
Sbjct 241 TATGGTCGCCGGA 253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73393196790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5