BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347510
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44290.1 | Symbols: anac060, NAC060 | NAC domain containing ... 1458 0.0
AT5G22290.1 | Symbols: anac089, NAC089 | NAC domain containing ... 436 1e-121
> AT3G44290.1 | Symbols: anac060, NAC060 | NAC domain containing
protein 60 | chr3:15972909-15975183 REVERSE LENGTH=1172
Length=1172
Score = 1458 bits (789), Expect = 0.0
Identities = 926/992 (93%), Gaps = 10/992 (1%)
Strand=Plus/Plus
Query 10 GAGCCGGCGGTGACGACGGCGTTCCCTGGCTTCAAATTCTCACCGACGGATATCGAACTC 69
|||||||||||||||||| |||||||||||||||||||||| ||||| || ||||||||
Sbjct 186 GAGCCGGCGGTGACGACGACGTTCCCTGGCTTCAAATTCTCCCCGACCGACATCGAACTT 245
Query 70 ATATCTTATTACTTGAA-ACGGAAGATGGATGGTTTGGAGAAG-TCCGTTGAGATTATAC 127
||||||||||||||||| | |||||||||||||||||||| || || |||||||||||||
Sbjct 246 ATATCTTATTACTTGAAGA-GGAAGATGGATGGTTTGGAG-AGATCTGTTGAGATTATAC 303
Query 128 CTGAAGTCGATATTTATAACTTCGAGCCTTGGGATTTGCCTGATAAGTCCATCGTTAAAT 187
|||| || || ||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 304 CTGAGGTTGAGATTTACAACTTCGAGCCTTGGGATTTACCTGATAAGTCTATCGTTAAAT 363
Query 188 CGGATAGTGAATGGTTCTTCTTCTGTGCTCGTGGTAAAAAGTATCCCCATGGTTCACAGA 247
||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 364 CGGATAGCGAATGGTTCTTCTTCTGTGCTCGCGGTAAGAAGTATCCCCACGGTTCACAGA 423
Query 248 ACAAAAGAGCAACCAGGATGGGATATTGGAAAGCCACAGGAAAGGAACGTAATGTGAAGT 307
||| ||||||||||| ||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 424 ACAGAAGAGCAACCAAGATAGGATATTGGAAAGCCACAGGAAAAGAGCGTAATGTGAAGT 483
Query 308 CGA-GTTCTGAGGTCATTGGAACAAAGAGGACGCTTGTATTCCACATTGGCCGCGCGCCA 366
| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 484 C-AGGTTCTGAGGTCATTGGAACAAAGAGAACGCTTGTATTCCACATTGGCCGCGCGCCA 542
Query 367 AAAGGTGGAAGGACGGAATGGATTATGCATGAGTATTGCATGATTGGAGTATCACTGGAT 426
||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 543 AAAGGAGGAAGAACGGAATGGCTTATGCATGAGTACTGCATGATTGGAGTATCACTGGAT 602
Query 427 GCTCTGGTTATTTGCCGACTTAGGAGGAATACTGAATTTCAAGGG-GCTACAATTCAAAA 485
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 603 GCTCTGGTTATTTGCCGACTTAGGAGGAATACTGAATTTCAAGGGAG-TACAATTCAAAA 661
Query 486 TCCACCACAGCCAAGTTTATCGTCTG-ACAAGCCCGAAAACTTGCAGAATGAAGCTATTT 544
|||||||| ||||||||| | ||| | |||| || |||||||| ||||||||||||||
Sbjct 662 GCCACCACAACCAAGTTTACCA-CTGGATAAGCACGTAAACTTGCGGAATGAAGCTATTT 720
Query 545 TAGAAAGTATTTCTGGTTGGGAAAATATGGTTGATTTTTACTTATCAAGTGAGTCAGGGC 604
||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 721 CAGAAAGTATTTATGGTTGGGAAACTATGGTTGATTTCTACTTATCAAGTGAGTCAGGGC 780
Query 605 AGGAACTACTAAGTGAAATAGCAGAATCTTCACAATCTTCACAAAATCCACAGGTTCCTA 664
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAGAACTACTTAGTGAAATAGCAGAATCTTCACAATCTTCACAAAATCCACAGGTTCCTA 840
Query 665 GTGAAGAAGATTTCTATGCGGATATCCTTAGGGATGAAATAGTAAAGCTAGATGATCCGG 724
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 841 GTGAAGAAGATTTCTATGCCGATATACTGAGGGATGAAATAGTAAAGCTAGATGATCCGG 900
Query 725 CGATATTGGGTAATACACTGACCAATGTCCCAAGGCTTCAAACAGAGTCCTACACCACAA 784
|| ||| ||||||||||||| |||||| ||||||||||||||||||||| | |||||||
Sbjct 901 CGGTATCCGGTAATACACTGATCAATGTACCAAGGCTTCAAACAGAGTCCAATACCACAA 960
Query 785 GATTACTACCTTTACCTGACATGGTAGACAAACAAATGCAATCCCTGCTACAGAAACTAC 844
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 961 GAGTACTACCTTTACCTGACATGGTAGACAAACAAATGCAATCGTTGCTACAGAAACTAC 1020
Query 845 CATTACAAAATGACACTGGAGAAGAAAACAACATATCCATGTCAAATTGCTTTATCGGTA 904
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1021 CATTACAAAATGACACTGGAGAAGAGAACAACATATCCATGTCAAATTGCTTTATCGGTA 1080
Query 905 TCTACTCAATTAAGTCTATAAACCGAGCGCGATGGGACGTTGTTGTTTGGTTACTGGTTA 964
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1081 TCTACTCGATTAAGTCTATAAACCGAGCGCGATGGGACGTTGTTGTTTGGTTACTCGTTA 1140
Query 965 TGATAGCCGTGTTGGTGTTTTATTTAGTGTGA 996
||||||||||||||||||||||||||||||||
Sbjct 1141 TGATAGCCGTGTTGGTGTTTTATTTAGTGTGA 1172
> AT5G22290.1 | Symbols: anac089, NAC089 | NAC domain containing
protein 89 | chr5:7375923-7377644 REVERSE LENGTH=1290
Length=1290
Score = 436 bits (236), Expect = 1e-121
Identities = 654/851 (77%), Gaps = 47/851 (6%)
Strand=Plus/Plus
Query 23 CGACGGCGTTCCCTGGCTTCAAATTCTCACCGACGGATATCGAACTCATATCTTATTACT 82
|||||| ||| ||||| || |||||||| ||||||||| | || | || || ||||||
Sbjct 202 CGACGGTGTTTCCTGGGTTTAAATTCTCGCCGACGGATGTGGAGTTGATTTCGTATTACC 261
Query 83 TGAAACGGAAGATGGATGGTTTGGAGAAGTCCGTTGAGATTATACCTGAAGTCGATATTT 142
|||| |||||||||||||| ||||||| |||||||||| ||||||| || | || ||||
Sbjct 262 TGAAGCGGAAGATGGATGGCTTGGAGAGGTCCGTTGAGGTTATACCGGACCTTGAGATTT 321
Query 143 ATAACTTCGAGCCTTGGGATTTGCCTGATAAGTCCATCGTTAAATCGGATAGTGAATGGT 202
| || ||||||||||||||||| || |||||||| || || ||||| ||||| || ||||
Sbjct 322 ACAATTTCGAGCCTTGGGATTTACCCGATAAGTCGATTGTGAAATCTGATAGCGAGTGGT 381
Query 203 TCTTCTTCTGTGCTCGTGGTAAAAAGTATCCCCATGGTTCACAGAACAAAAGAGCAACCA 262
||||||||||||| ||||| ||||||||||| |||||||||||||||| |||||||| |
Sbjct 382 TCTTCTTCTGTGCGCGTGGGAAAAAGTATCCACATGGTTCACAGAACAGGAGAGCAACGA 441
Query 263 GGATGGGATATTGGAAAGCCAC-AGGAAAGGAACGTAATGTGAAGTC-GAGTTCTGAGGT 320
||||||||| |||||||| || ||||| || ||| |||||||||| | ||||||||||
Sbjct 442 AGATGGGATACTGGAAAGCAACTGGGAAA-GAGCGTGATGTGAAGTCTG-GTTCTGAGGT 499
Query 321 CATTGGAACAAAGAGGACGCTTGTATTCCACATTGGCCGCGCGCCAAAAGGTGGAAGGAC 380
|||||||||||||||||||||||| ||||| ||||| || || |||||||| | ||| ||
Sbjct 500 CATTGGAACAAAGAGGACGCTTGTTTTCCATATTGGTCGTGCACCAAAAGGCGAAAGAAC 559
Query 381 GGAATGGATTATGCATGAGTATTGCATGATTGGAGTATCACTGGATGCT-CT--GGTTAT 437
|| ||||||||||| ||||| ||| ||| |||||||| ||||||| | || |||| |
Sbjct 560 TGACTGGATTATGCACGAGTACTGCGTGAAAGGAGTATCTCTGGATGATGCTATGGTTGT 619
Query 438 TTGCCGACTTAGGAGGAATACTGAATTTCAAG-G-GGCTACAATTCAAAATCCACCACAG 495
|||||| |||||||||| | |||| ||| | || ||||| ||| || ||||| ||
Sbjct 620 TTGCCGGGTTAGGAGGAACAAAGAATA-CAATAGTGG-TACAAGTCAGAAGGCACCAAAG 677
Query 496 CCAAGTTTATC-GTCTGACAAGCC--CGAAAACTTGCAGAATGAAGCTATT--TT-AGAA 549
|||| || ||| | | || |||| ||||| | || |||| |||| || ||
Sbjct 678 CCAAATTCATCAGCC-GAGAAGCATGCGAAAG-TC-CAAAATGGCGCTACGAGTTCAGGG 734
Query 550 AGTATTTCTGGTTGGGAAAA-TATGGTTGATTTTTACTTATCAAGTGAGTCAGGGCAGGA 608
|| |||| |||||| || | |||||||||||||| || || |||| |||||| || |
Sbjct 735 AGCCCGTCTGATTGGGACAACT-TGGTTGATTTTTACCTAGCAGGTGAATCAGGGGAGAA 793
Query 609 ACTACTAAG-TGAAATAGCAGAATCTTCACAATCTTCACAAAATCCACAGGTTCCTAGTG 667
|||||| | ||| || ||||| || | || | |||||| |||||| || ||
Sbjct 794 ACTACTC-GCTGAGATGGCAGAGTC---A---TC---AGAAAATCTACAGGTGGATAATG 843
Query 668 AAGAAGATTTCTATGCGGATATCCTTAGGGATGAAAT-AGTAAAGCTAGATGATCCGGCG 726
| || ||||||| |||||||||||| || || ||||| | | || || ||||| ||| |
Sbjct 844 ACGAGGATTTCTTTGCGGATATCCTAAGAGACGAAATCA-TCAATCTCGATGAAGCGGTG 902
Query 727 AT-ATTGGGTAATACACTGACC-AATGTCCCAAGGCTTCAAACAG-AGTCC-TACACCAC 782
|| | ||| || |||| | | || || |||| || || ||| | || | | |
Sbjct 903 ATGACAGGG-AACACACCAAACGAA-GTGCCAACACTAGAATCAGCA-TCAATGGAG-AT 958
Query 783 AAGATTACTACCTTTACCTGACATGGTAGACAAACAAATG-CAATCCCTGCTACAG-AAA 840
||| |||| |||||||| ||||| |||||||||||||| || || ||| || || |||
Sbjct 959 AAGGGTACTTCCTTTACCAAACATGATAGACAAACAAATGTCA-TCACTGTTAGAGGAAA 1017
Query 841 CTACCATTACA 851
||||| |||
Sbjct 1018 G-ACCATCACA 1027
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48777356737
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5