BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347555
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44770.1 | Symbols: | Protein of unknown function (DUF626) ... 545 2e-154
> AT3G44770.1 | Symbols: | Protein of unknown function (DUF626)
| chr3:16316080-16319458 FORWARD LENGTH=1518
Length=1518
Score = 545 bits (295), Expect = 2e-154
Identities = 347/373 (93%), Gaps = 0/373 (0%)
Strand=Plus/Plus
Query 401 AGACCTTGGTCACAAGATCTTTCTCTAGGAATGGAGAGCACTTAAGAGTCTCTACTGGAA 460
||| |||||||||||||||||| |||||||| |||||| |||||||||||||||||||||
Sbjct 701 AGAACTTGGTCACAAGATCTTTTTCTAGGAACGGAGAGGACTTAAGAGTCTCTACTGGAA 760
Query 461 TTTGCAGAATCAAACCCGAAACACCTGAAGGAGATATCTGTCTTGTGGATGAGGAAGCAA 520
||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||
Sbjct 761 TTTGCAGAATCAAACCCAAAACACCTGAAAGAGAGATCTGTCTTGTGGATGAGGAAGCAA 820
Query 521 TAGATAAGTTTTACAAAGGTGTTATGCCCAACTTTGTGTCCAAAGAAGGAGCTGTCAATG 580
||||||||||||||| |||||||||||||||||||||||||||| ||| |||| | |||
Sbjct 821 TAGATAAGTTTTACAGAGGTGTTATGCCCAACTTTGTGTCCAAACTAGGGGCTGACGATG 880
Query 581 ATAAGTTGAGATTCTACGAGGTTCAGGAGCAGGACATATGTGCAAATGATTGGCTACGTC 640
||||| |||| |||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 881 ATAAGCTGAGGTTCTACGAGGTTCAGGAGCAGGACGTATGTGCAAATGATTGGTTACGTC 940
Query 641 TATATACTGAATTTGCACTTTTTTCCTTCTGGAGATATAATGAGGATGGGTTTGAGTCTT 700
||||||||||||| |||||||| |||| |||||||||||||||||| || ||||||||||
Sbjct 941 TATATACTGAATTCGCACTTTTCTCCTACTGGAGATATAATGAGGACGGATTTGAGTCTT 1000
Query 701 GTTTACCTGTGGAGATCAAGAAGATAATTGTGGAGACTTGTGAAACTCATAGAGAGCCGC 760
|||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 1001 GTTTACCTGTGGAGATCAAGAAGATAATTGTGGAAACTTGTGACACTCACAGAGAGCCGC 1060
Query 761 GTCTGAAGCTGAA 773
|| ||||||||||
Sbjct 1061 GTATGAAGCTGAA 1073
Score = 305 bits (165), Expect = 4e-82
Identities = 203/221 (92%), Gaps = 3/221 (1%)
Strand=Plus/Plus
Query 183 TCTGGGTTTCGATATTGATGGTAATGTTCGTATCCCATCATGTGGAATCTCACCAGTCTT 242
||| |||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||
Sbjct 445 TCT-GGTTTCGATATTGATGGTAAAGTTTGTATCCCAGCATGTGGAATCTCACCAGTCTT 503
Query 243 TCTAGGTGCTAATGAAAGCCCGCATAGCGAAATCAG-TCTTTATGGCCGTTTGGGAGTTC 301
||||||||||||| ||| ||||| ||||||| || | |||||||||||||||||||||||
Sbjct 504 TCTAGGTGCTAATAAAAACCCGCGTAGCGAAGTC-GCTCTTTATGGCCGTTTGGGAGTTC 562
Query 302 ATTGCTTCAATATTGACAAGGAGGGGAAGTTGAAGTATATGCGCATACCTAAATACAATA 361
|||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 563 ATTGCTTCAACATTGACAAGGAGAGGAAGTTTCAGTATATGCGCATACCTAAATACAATG 622
Query 362 TTCAATTTCCTAAAGCTATGTCTTTCTATATAACCGTGGAG 402
|||||| |||| |||||||||||||| ||||||||||||||
Sbjct 623 TTCAATATCCTGAAGCTATGTCTTTCCATATAACCGTGGAG 663
Score = 239 bits (129), Expect = 4e-62
Identities = 153/165 (93%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 23 GTGGGAAATTATCAGACGAAACCTGCCACTCGATTTTGTGTGGATTAGGTAAACATGTCG 82
|||| |||||||| |||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 241 GTGGAAAATTATCTGACGAAACCTGCCACTCGATTTTGTGTGGATTGGGTCAACATGTCG 300
Query 83 ATGCTTTTCATTTATCCAAAACCAAAGAAGAAGTTGATGGATGGACTTCGGAGGAAGATG 142
||||||| ||||||||||||||| |||||||||| || |||||||| || ||||||||||
Sbjct 301 ATGCTTTACATTTATCCAAAACCGAAGAAGAAGTCGACGGATGGACATCTGAGGAAGATG 360
Query 143 AACAGCTTGACCAAGAATACTGTCGCCAAGTTACCGAGTCTCTGG 187
|| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGAACTTGACCAAGAATACTGTCGCCAAGTTACCGAGTCTCTGG 405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5