BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg347590

Length=855
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03360.1 | Symbols:  | DC1 domain-containing protein | chr5:...   126    3e-28
  AT1G66440.1 | Symbols:  | Cysteine/Histidine-rich C1 domain fam...   121    1e-26


> AT5G03360.1 | Symbols:  | DC1 domain-containing protein | chr5:817864-825149 
FORWARD LENGTH=4923
Length=4923

 Score =  126 bits (68),  Expect = 3e-28
 Identities = 95/107 (89%), Gaps = 6/107 (6%)
 Strand=Plus/Plus

Query  571   CATTTTCGATG-CGCAGGTTGCAATGGCGAGAACCATGAAGAATAT-AACAAGACTCCGG  628
             ||||||||||| || |||||||||||| ||||||||| |||  ||| ||| || ||||||
Sbjct  3757  CATTTTCGATGTCG-AGGTTGCAATGGTGAGAACCATAAAGGTTATGAAC-AGGCTCCGG  3814

Query  629   TTGA-GATCAAACACCATCTTCATCCAAAACATTCTCTTCAGCTTGT  674
             |||| | ||||||||| ||||||||||||||||||||||||||||||
Sbjct  3815  TTGATG-TCAAACACCCTCTTCATCCAAAACATTCTCTTCAGCTTGT  3860


> AT1G66440.1 | Symbols:  | Cysteine/Histidine-rich C1 domain family 
protein | chr1:24782171-24784351 FORWARD LENGTH=2181
Length=2181

 Score =  121 bits (65),  Expect = 1e-26
 Identities = 166/213 (78%), Gaps = 14/213 (7%)
 Strand=Plus/Plus

Query  571  CATTTTCGATGCGCAGGTTGC-AATGGCGAGAACCATGAAGAATATAACAAGACTCCGGT  629
            |||||||  ||| || ||||| || || || || |||||||||||| | ||| ||||  |
Sbjct  613  CATTTTCTCTGCCCAAGTTGCGAA-GGTGATAATCATGAAGAATATGAGAAGGCTCCACT  671

Query  630  TGAGATCAAACACCATCTTCATCCAAAACATTCTCTTCAGCTTGTC----AAGT-T-GAA  683
            |||| ||||||||| |||||||||||||||||||||||||||| ||    ||   | |  
Sbjct  672  TGAGGTCAAACACCCTCTTCATCCAAAACATTCTCTTCAGCTTATCTTGGAAAACTCGTG  731

Query  684  GGG-TGGCGAGACCAGGAAATGTTATTGTTGTGATGAAGATA-TCATAATG-ATAttttt  740
            ||| || ||| |  || ||||| ||||||||||||||| ||| || || || ||||||| 
Sbjct  732  GGGATGTCGAAAAAAG-AAATGCTATTGTTGTGATGAA-ATACTCCTA-TGGATATTTTA  788

Query  741  ttATTGCTCGACTTGCGATTTTGCTATGAACAT  773
            ||| || | |  |||||||| || |||||||||
Sbjct  789  TTACTGTTGGGTTTGCGATTGTGGTATGAACAT  821



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41694342010


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5