BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg347611

Length=759
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G05400.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   137    1e-31


> AT1G05400.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G06810.1); 
Has 31 Blast hits to 31 proteins in 2 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:1584073-1585421 
FORWARD LENGTH=996
Length=996

 Score =  137 bits (74),  Expect = 1e-31
 Identities = 153/189 (81%), Gaps = 14/189 (7%)
 Strand=Plus/Plus

Query  33   TTGGGGCATG-AGCACTTGTCCGGTTCCCGATGGCTATGATGCTCGTCGGGTTGGTCCGT  91
            ||||| |||| || |  ||||||||||| |||| ||||||||||||||||||||||||||
Sbjct  159  TTGGGACATGAAG-AGGTGTCCGGTTCCAGATGACTATGATGCTCGTCGGGTTGGTCCGT  217

Query  92   GTATTAAACGAGCATTG-AAG-AAATTAGGCTACACTGGTGGTGTCTCCATCACTGGCC-  148
            |||||||||| | |||  ||| |||| |||||||| ||||  |||| ||||||||| |  
Sbjct  218  GTATTAAACG-G-ATTTTAAGGAAATCAGGCTACAATGGTCCTGTCACCATCACTG-CTG  274

Query  149  TTGGCAT-ACTAACAAACGTCTCTACC-GACATCCT-GCAAGCGCTCTATTCCTCCGGAG  205
            ||||| | |||| |||| ||| || |  |||||||| | ||| | ||| |||| | ||| 
Sbjct  275  TTGGC-TCACTATCAAAGGTCCCT-CGTGACATCCTTG-AAGTGGTCTCTTCCACTGGAA  331

Query  206  TCTCTCTTT  214
            |||||||||
Sbjct  332  TCTCTCTTT  340



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36871863898


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5