BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347627
Length=594
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45443.1 | Symbols: | unknown protein; Has 4 Blast hits to ... 206 3e-52
> AT3G45443.1 | Symbols: | unknown protein; Has 4 Blast hits to
4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:16667977-16669561 REVERSE LENGTH=998
Length=998
Score = 206 bits (111), Expect = 3e-52
Identities = 159/181 (88%), Gaps = 8/181 (4%)
Strand=Plus/Plus
Query 1 ATGGCTC-AGATATTGCATCTGATCTGGATGATTTTCTGTGTTCATCTGCTTTGCATCTC 59
||||||| ||| ||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 471 ATGGCTCGAGA-ATTGCATCTGATCTGGATGATTTTCTGTGTTCATCTGATTGGCTTCTC 529
Query 60 ATGTCAACAGGAGACAGGGTTTATCTATAAAGGTTTCGGCCAAACAGACCATGGACATGG 119
| |||||||||| || ||||||||||||||| |||| || |||||| ||||||| |
Sbjct 530 AAGTCAACAGGAAACGGGGTTTATCTATAAACGTTTTGGTGAAACAGGCCATGGAG-T-- 586
Query 120 AGGTGCCAAAGGATTGTTGCAGTTGACCGATGGATCCAGACTGAAAATGGGTCATACCTT 179
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 587 ---TGCCAAAGGATTGTTGAAGTTGACCGATGGATCCAGAGTGAAAATGGGTCATACCTT 643
Query 180 C 180
|
Sbjct 644 C 644
Score = 87.9 bits (47), Expect = 1e-16
Identities = 52/54 (96%), Gaps = 2/54 (4%)
Strand=Plus/Plus
Query 284 TCGTTTTACCGACAATCATAATGTATTTGGCTCTTGGAGCAGTTTAT-GTCTAT 336
|||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 662 TCGTTTTACCGACAATCATAATGTATTTGGCTCTTGGAGCAGTT-ATTGTCTAT 714
Score = 80.5 bits (43), Expect = 2e-14
Identities = 49/52 (94%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 429 GAAAGGGTTTAACAAGGATGGACTTGTCAGAAAAAGAGGTTTCGGAGAAGTA 480
|||| ||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 723 GAAATGGTATAACAAGGATGGACTTGTCAGAAAAAGAGGTTTCAGAGAAGTA 774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28583229643
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5