BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg347642
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43750.1 | Symbols: | RING/U-box protein with C6HC-type zin... 388 3e-107
> AT3G43750.1 | Symbols: | RING/U-box protein with C6HC-type zinc
finger domain | chr3:15646460-15647566 FORWARD LENGTH=1041
Length=1041
Score = 388 bits (210), Expect = 3e-107
Identities = 450/562 (80%), Gaps = 31/562 (6%)
Strand=Plus/Plus
Query 36 TATGCCTGCGACTTGCTGTATCTGTTTCGACCATGACTTGGAAGCTGAGCAGATGTTTTC 95
|||||||||||||||| | ||||||||| | ||| |||||||||||| ||||||||||
Sbjct 450 TATGCCTGCGACTTGCAGCATCTGTTTCAATAATGTTTTGGAAGCTGAGAAGATGTTTTC 509
Query 96 TGTTTATTTATGCCGTCATCAATTCTGTGTGGAGTGCGTGAAACGAT-ATATAGAAGTAA 154
|||| | ||||| |||||||||||||||||||||||||||||| || |||||||||| |
Sbjct 510 TGTTGCTATATGCGGTCATCAATTCTGTGTGGAGTGCGTGAAAC-ATTATATAGAAGTGA 568
Query 155 AGCTAGTTGAGGGAGGTGTACTAAGATGTCCTCATTATCAATGCGAGTCTAAGCTAACTC 214
||||| | ||||||||||||| ||||||| | |||||||||||||||||||||||||||
Sbjct 569 AGCTACTCGAGGGAGGTGTACCGAGATGTCTTGATTATCAATGCGAGTCTAAGCTAACTC 628
Query 215 TTAGAAGTTGTGACAATATTTTGACACATAAAC-AAAGAGAC-ATGTGGGAA-CGAAGGA 271
||| |||||||| |||| |||| |||| ||||| |||| | | || ||| || | |||||
Sbjct 629 TTACAAGTTGTGGCAATCTTTTAACACCTAAACTAAAG-G-CGATATGG-AAGCAAAGGA 685
Query 272 ATAGA-GAAGAATC-AGTTCCTGC-GACGGACAGGGTTTACTGCCCAAATCCAAGGTGCT 328
| || || || | | ||| || | |||| || ||||| || ||||| || |||||||
Sbjct 686 -TCGAAGAGGAGTTGA-TTCTTGTAG-CGGAGAGAGTTTATTGTCCAAACCCGAGGTGCT 742
Query 329 CGGCTTTAATGTCGAAAGCCGAGCTCTCCAAATCAACTAAAGAAGCTGGA-GTTAAGAG- 386
||| |||||||||||| |||||||||| | ||||||| |||||| || | || | ||
Sbjct 743 CGGGATTAATGTCGAAAACCGAGCTCTCTACATCAACTGAAGAAGATGTAAGT-ACTAGG 801
Query 387 AC--GTTGCGTCAAATGCTCTCAACC-TTTCTGCATGAACTGCAAAGTTTTGTGGCATAA 443
|| |||| || |||||| | |||| ||| ||||| |||||||||||| ||||||||
Sbjct 802 ACTTGTTGTGTTAAATGCGGTGAACCCTTT-TGCATCAACTGCAAAGTTCCGTGGCATAG 860
Query 444 TAACTTGTTGTGCGACGATTATATGAGAT-G--TC-A--TCATACGGCAGATGATATGAT 497
|||||||| ||||| ||||| | ||||| | || | || ||| | ||||||| |
Sbjct 861 TAACTTGTCATGCGATGATTACAAGAGATTGGGTCCAAATCCTACAAAAAATGATATAAA 920
Query 498 GCTAAAAAATCTAGCAAATCAT-AATATGTGGCGTCAATGTGTAAATTGCCAACAGATGA 556
||||||| | | |||||||| || | |||| ||||||||| ||| |||||||| ||||
Sbjct 921 GCTAAAAGTTTTGGCAAATCAGCAAAA-GTGGAGTCAATGTGCAAAGTGCCAACACATGA 979
Query 557 TCGAACGT-TCAGAAGGATGCA 577
| | |||| || ||||||||||
Sbjct 980 TTGCACGTATC-GAAGGATGCA 1000
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33405707755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5