BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg347700

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G14590.1 | Symbols: emb2739 | embryo defective 2739 | chr4:8...   150    9e-36


> AT4G14590.1 | Symbols: emb2739 | embryo defective 2739 | chr4:8374391-8375962 
FORWARD LENGTH=1527
Length=1527

 Score =  150 bits (81),  Expect = 9e-36
 Identities = 122/141 (87%), Gaps = 5/141 (4%)
 Strand=Plus/Plus

Query  260   GTAGGCAAAATCATCACACCGAACAAAGTGCTAAGCTCGCTCTGTTTTACGATTGGCTCT  319
             |||||||||||||||||| ||| | ||| | || ||| |||||||||||||| |||||||
Sbjct  980   GTAGGCAAAATCATCACATCGAGCGAAGCGTTATGCTGGCTCTGTTTTACGACTGGCTCT  1039

Query  320   TCTTCGATGACAGAATCGACAATATTATTATGAATGTTGAACCTGCTGCTCTCTTGATGG  379
             |||| || || |||||||   ||| |||||||||||||||||||||||||||||||||||
Sbjct  1040  TCTTTGACGAAAGAATCG---ATAATATTATGAATGTTGAACCTGCTGCTCTCTTGATGG  1096

Query  380   TACGATCAA--CCGCAGTATC  398
             || | ||||  ||||||||||
Sbjct  1097  TATGGTCAATACCGCAGTATC  1117



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20660044839


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5